hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16523560/chunk_1/iprscan-20080501-16523560.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0082 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01728.9.fs FtsJ-like methyltransferase 150.2 3.4e-46 1 PF01728.9.ls FtsJ-like methyltransferase 143.3 6e-40 1 PF01585.13.fs G-patch domain 57.2 9.2e-16 1 PF01585.13.ls G-patch domain 59.2 1.3e-14 1 PF00397.16.fs WW domain 31.2 8.9e-08 1 PF00397.16.ls WW domain 33.3 8.1e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01585.13.ls 1/1 134 178 .. 1 45 [] 59.2 1.3e-14 PF01585.13.fs 1/1 134 178 .. 1 45 [] 57.2 9.2e-16 PF01728.9.ls 1/1 299 498 .. 1 216 [] 143.3 6e-40 PF01728.9.fs 1/1 322 498 .. 29 216 .] 150.2 3.4e-46 PF00397.16.fs 1/1 801 831 .. 1 30 [] 31.2 8.9e-08 PF00397.16.ls 1/1 801 831 .. 1 30 [] 33.3 8.1e-07 Alignments of top-scoring domains: PF01585.13.ls: domain 1 of 1, from 134 to 178: score 59.2, E = 1.3e-14 *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<- ++++ +kl++KMG++eG+GLGk +qG+k+ +ea +++r+GLG KIAA0082 134 YNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLT 178 * KIAA0082 - - PF01585.13.fs: domain 1 of 1, from 134 to 178: score 57.2, E = 9.2e-16 *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<- ++++ +kl++KMG++eG+GLGk +qG+k+ +ea +++r+GLG KIAA0082 134 YNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLT 178 * KIAA0082 - - PF01728.9.ls: domain 1 of 1, from 299 to 498: score 143.3, E = 6e-40 *->yRsRsafKLleinekFkllkprngkrVlDLGAAPGgWsQVavkrlgp +R ++ + + ++ ++ ++ D++A+PGg+s++++ r+++ KIAA0082 299 TNPRDSYGKPLVKD-----REAELLYFADVCAGPGGFSEYVLWRKKW 340 lck.fgetLgseeeaekgkvvavDlqpikpipgdnscvitlqgDitdekt +k+fg tL + ++++ + +++ ++p++g+ i+ gDit +++ KIAA0082 341 HAKgFGMTLKGPNDFKLEDFYSASSELFEPYYGEG--GIDGDGDITRPEN 388 lakwirellgnaekkqkatvDlVlsDgapISTvLnvtGnrdiDeyrsieL ++ r + ++++ + v++ ++Dg + +v G+++++e++s++L KIAA0082 389 ISA-FRNFVLDNTDRKG--VHFLMADGGF-----SVEGQENLQEILSKQL 430 vlaaldlaEnlevLkpgGnfVvKvFrgedpetldllnllkklFrkvkviK l+++ +a l +++ gG+f++K F+ + p++ l++ll+ +F+ v+++K KIAA0082 431 LLCQFLMA--LSIVRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFK 478 PpaSRpsSaEiYlVcrgfkg<-* P SRp+++E+Y+Vc+g k KIAA0082 479 PITSRPANSERYVVCKGLKV 498 PF01728.9.fs: domain 1 of 1, from 322 to 498: score 150.2, E = 3.4e-46 *->DLGAAPGgWsQVavkrlgplck.fgetLgseeeaekgkvvavDlqpi D++A+PGg+s++++ r+++ +k+fg tL + ++++ + +++ + KIAA0082 322 DVCAGPGGFSEYVLWRKKWHAKgFGMTLKGPNDFKLEDFYSASSELF 368 kpipgdnscvitlqgDitdektlakwirellgnaekkqkatvDlVlsDga +p++g+ i+ gDit +++ ++ r + ++++ + v++ ++Dg KIAA0082 369 EPYYGEG--GIDGDGDITRPENISA-FRNFVLDNTDRKG--VHFLMADGG 413 pISTvLnvtGnrdiDeyrsieLvlaaldlaEnlevLkpgGnfVvKvFrge + +v G+++++e++s++L l+++ +a l +++ gG+f++K F+ + KIAA0082 414 F-----SVEGQENLQEILSKQLLLCQFLMA--LSIVRTGGHFICKTFDLF 456 dpetldllnllkklFrkvkviKPpaSRpsSaEiYlVcrgfkg<-* p++ l++ll+ +F+ v+++KP SRp+++E+Y+Vc+g k KIAA0082 457 TPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKV 498 PF00397.16.fs: domain 1 of 1, from 801 to 831: score 31.2, E = 8.9e-08 *->lppgWeertd.pdGrpYYyNhnTktTqWekP<-* ++++W++ ++++ +++++yN++Tk ++++ P KIAA0082 801 VNEPWTMGFSkSFKKKFFYNKKTKDSTFDLP 831 PF00397.16.ls: domain 1 of 1, from 801 to 831: score 33.3, E = 8.1e-07 *->lppgWeertd.pdGrpYYyNhnTktTqWekP<-* ++++W++ ++++ +++++yN++Tk ++++ P KIAA0082 801 VNEPWTMGFSkSFKKKFFYNKKTKDSTFDLP 831 //