hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17040710/chunk_1/iprscan-20080501-17040710.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0089
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF07479.4.ls   NAD-dependent glycerol-3-phosphate deh   293.4    4.1e-85   1
PF07479.4.fs   NAD-dependent glycerol-3-phosphate deh   291.4    1.6e-84   1
PF01210.13.fs  NAD-dependent glycerol-3-phosphate deh   241.7    5.2e-71   1
PF01210.13.ls  NAD-dependent glycerol-3-phosphate deh   243.6    3.9e-70   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01210.13.fs    1/1      66   237 ..     1   172 []   241.7  5.2e-71
PF01210.13.ls    1/1      66   237 ..     1   172 []   243.6  3.9e-70
PF07479.4.fs     1/1     254   404 ..     1   160 []   291.4  1.6e-84
PF07479.4.ls     1/1     254   404 ..     1   160 []   293.4  4.1e-85

Alignments of top-scoring domains:
PF01210.13.fs: domain 1 of 1, from 66 to 237: score 241.7, E = 5.2e-71
                   *->kkiaVlGaGsWGTALAkvLarng.....FeheVrlWgrde.i.geel
                       k++++G+G+WG+A+Ak+ ++n ++ ++F  +V +W+++e+++g++l
    KIAA0089    66    LKVCIVGSGNWGSAVAKIIGNNVkklqkFASTVKMWVFEEtVnGRKL 112  

                   ieeiNttreNvrYLPgikLPenlrattDLeeAlkgAdvivlaVPsqalre
                   ++ iN+++eNv+YLPg+kLPen++a+++L eA+++Ad++v+++P+q+++ 
    KIAA0089   113 TDIINNDHENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHR 162  

                   vlkqlkgllrikpdailvsltKGiev.EpgtlkllSevieEeLpinppqi
                   +++++ g +  +++a  + l+KGi+++ + +lkl+S++i+E ++i+   i
    KIAA0089   163 ICDEITGRV--PKKALGITLIKGIDEgPE-GLKLISDIIREKMGID---I 206  

                   aVLSGPshAeEVAkglpTavvvAsreedqqaae<-*
                    VL+G+++A+EVA++++++++++s  + +++     
    KIAA0089   207 SVLMGANIANEVAAEKFCETTIGS--KVMENGL    237  

PF01210.13.ls: domain 1 of 1, from 66 to 237: score 243.6, E = 3.9e-70
                   *->kkiaVlGaGsWGTALAkvLarng.....FeheVrlWgrde.i.geel
                       k++++G+G+WG+A+Ak+ ++n ++ ++F  +V +W+++e+++g++l
    KIAA0089    66    LKVCIVGSGNWGSAVAKIIGNNVkklqkFASTVKMWVFEEtVnGRKL 112  

                   ieeiNttreNvrYLPgikLPenlrattDLeeAlkgAdvivlaVPsqalre
                   ++ iN+++eNv+YLPg+kLPen++a+++L eA+++Ad++v+++P+q+++ 
    KIAA0089   113 TDIINNDHENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHR 162  

                   vlkqlkgllrikpdailvsltKGiev.EpgtlkllSevieEeLpinppqi
                   +++++ g +  +++a  + l+KGi+++ + +lkl+S++i+E ++i+   i
    KIAA0089   163 ICDEITGRV--PKKALGITLIKGIDEgPE-GLKLISDIIREKMGID---I 206  

                   aVLSGPshAeEVAkglpTavvvAsreedqqaae<-*
                    VL+G+++A+EVA++++++++++s  + +++     
    KIAA0089   207 SVLMGANIANEVAAEKFCETTIGS--KVMENGL    237  

PF07479.4.fs: domain 1 of 1, from 254 to 404: score 291.4, E = 1.6e-84
                   *->eDvvGvEigGALKNViAIAaGivDGkeylgfGdNaKAalitrGLaEm
                      +D ++vE++GALKN++A++aG++DG   l  GdN+KAa+i++GL+Em
    KIAA0089   254    DDADTVELCGALKNIVAVGAGFCDG---LRCGDNTKAAVIRLGLMEM 297  

                   iklgaalGggpeetaTffgLaGlGDLitTCtselsRNrrvGeaLgkgGIl
                   i+++++++ g   taTf++++G++DLitTC++  +RNrrv+ea++++G  
    KIAA0089   298 IAFARIFCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTG-- 343  

                   ksleeiekelselnGqvaEGvkTakevyelakrkglvedmPlteaVYril
                   k++ee+eke+  lnGq+++G+ T +evy+++k+kgl++++Pl++aVY+i+
    KIAA0089   344 KTIEELEKEM--LNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQIC 391  

                   yeglkpeeaieeL<-*
                   ye  +++e + +L   
    KIAA0089   392 YESRPVQEMLSCL    404  

PF07479.4.ls: domain 1 of 1, from 254 to 404: score 293.4, E = 4.1e-85
                   *->eDvvGvEigGALKNViAIAaGivDGkeylgfGdNaKAalitrGLaEm
                      +D ++vE++GALKN++A++aG++DG   l  GdN+KAa+i++GL+Em
    KIAA0089   254    DDADTVELCGALKNIVAVGAGFCDG---LRCGDNTKAAVIRLGLMEM 297  

                   iklgaalGggpeetaTffgLaGlGDLitTCtselsRNrrvGeaLgkgGIl
                   i+++++++ g   taTf++++G++DLitTC++  +RNrrv+ea++++G  
    KIAA0089   298 IAFARIFCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTG-- 343  

                   ksleeiekelselnGqvaEGvkTakevyelakrkglvedmPlteaVYril
                   k++ee+eke+  lnGq+++G+ T +evy+++k+kgl++++Pl++aVY+i+
    KIAA0089   344 KTIEELEKEM--LNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQIC 391  

                   yeglkpeeaieeL<-*
                   ye  +++e + +L   
    KIAA0089   392 YESRPVQEMLSCL    404  

//