HUGE

Gene/Protein Characteristic Table for KIAA0090

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00012
Accession No. :	D42044
Description :
HUGO Gene Name :
Clone Name :	eh00576 [Vector Info]
Flexi ORF Clone :	pF1KA0090
Source :
Note :	We replaced ha03523, former representative clones for KIAA0090 with eh00576. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 5411 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2435 bp

Genome contig ID gi89161185r_19316071
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GACCAGCCTGGGCAACATAGCAAGACTCTATCTAC
Flanking genome sequence
(99884 - 99835)
----+----*----+----*----+----*----+----*----+----*
AAAAAATAAAAAAAAATTAGCCGGGCCTGGTGGCATGTGCCTGTGGTCCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 19415955 19450587 23 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 991 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAF84307	99.8	unnamed protein...	Homo sapiens
CAH56140	99.8	hypothetical pr...	Homo sapiens
XP_001091700	99.0	similar to CG29...	Macaca mulatta
CAH56165	99.4	hypothetical pr...	Homo sapiens
XP_001504430	96.2	similar to CG29...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR011678 717 990 PF07774 Protein of unknown function DUF1620

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011678	717	990	PF07774	Protein of unknown function DUF1620

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 6 SRFWLWATLLIPAAAVYEDQVGK 28 SECONDARY 23

2 956 DDYDYVLISSVLFGLVFATMIT 977 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	6	SRFWLWATLLIPAAAVYEDQVGK	28	SECONDARY	23
2	956	DDYDYVLISSVLFGLVFATMIT	977	PRIMARY	22

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

Experimental conditions

Panel name	:
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2435 bp
Genome contig ID	gi89161185r_19316071
PolyA signal sequence (None)	+--------+--------+----*----+---- GACCAGCCTGGGCAACATAGCAAGACTCTATCTAC
Flanking genome sequence (99884 - 99835)	----+--------+--------+--------+--------+----* AAAAAATAAAAAAAAATTAGCCGGGCCTGGTGGCATGTGCCTGTGGTCCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	19415955	19450587	23	99.5	Perfect prediction

Gene/Protein Characteristic Table for KIAA0090

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information