hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17054417/chunk_1/iprscan-20080501-17054417.nocrc
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Query sequence: KIAA0090
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07774.3.fs Protein of unknown function (DUF1620)          590.1   1.1e-198   2
PF07774.3.ls Protein of unknown function (DUF1620)          590.5   1.4e-174   1
PF01011.11.fs PQQ enzyme repeat                               25.4    8.9e-07   2
PF01011.11.ls PQQ enzyme repeat                               29.4    1.2e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07774.3.fs   2/2     717   990 ..     1   304 []   588.5 3.8e-198
PF07774.3.ls   1/1     717   990 ..     1   304 []   590.5 1.4e-174

Alignments of top-scoring domains:
PF07774.3.fs: domain 2 of 2, from 717 to 990: score 588.5, E = 3.8e-198
                   *->VhsqGrVLgDRsVlYKYlNpNLvavatvskKqgeiGsanteesvLti
                      VhsqGrV+gDRsVlYK lNpNL+av+t+s+      +a++e+++++i
    KIAA0090   717    VHSQGRVMGDRSVLYKSLNPNLLAVVTEST------DAHHERTFIGI 757  

                   yLiDtVTGsIlhsakHqkarnllpPihlegVfsENWvVYsYfSnkkarrt
                   +LiD+VTG+I+hs+ ++ka +   P+h+  V+sENWvVY+Y+ n karr+
    KIAA0090   758 FLIDGVTGRIIHSSVQKKAKG---PVHI--VHSENWVVYQYW-NTKARRN 801  

                   eitviELYEgsepdnkdvwssilstsnklkpvtlfdvplpivksQsYIfp
                   e+tv ELYEg+e++n++++ss+++++            lp+v +QsYIfp
    KIAA0090   802 EFTVLELYEGTEQYNATAFSSLDRPQ------------LPQVLQQSYIFP 839  

                   hsIkalsvTiTerGITsKhiLigLpsGqIleipkaLLdpRRpvesepted
                   +sI+a+++TiTerGITs+h+LigLpsG+Il++pkaLLdpRRp    pte+
    KIAA0090   840 SSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPE--IPTEQ 887  

                   erEEglAIPYtPeipinpnsfiThnqtVyglrgSkIiSaPSnLESTtLVf
                   +rEE+l IPY+P+++i++++fi++nqtV+++rg  I++aPS+LEST+LV+
    KIAA0090   888 SREENL-IPYSPDVQIHAERFINYNQTVSRMRG--IYTAPSGLESTCLVV 934  

                   ayGqlDlFfTRvaPSgtFDiLsddFdkvlLlitifaLlvatyitkplvsk
                   ayG lD+++TRv+PS++FD+L+dd+d+vl++ ++f+L++at+itk+l++ 
    KIAA0090   935 AYG-LDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQV 983  

                   KlLnskW<-*
                   KlLn++W   
    KIAA0090   984 KLLNRAW    990  

PF07774.3.ls: domain 1 of 1, from 717 to 990: score 590.5, E = 1.4e-174
                   *->VhsqGrVLgDRsVlYKYlNpNLvavatvskKqgeiGsanteesvLti
                      VhsqGrV+gDRsVlYK lNpNL+av+t+s+      +a++e+++++i
    KIAA0090   717    VHSQGRVMGDRSVLYKSLNPNLLAVVTEST------DAHHERTFIGI 757  

                   yLiDtVTGsIlhsakHqkarnllpPihlegVfsENWvVYsYfSnkkarrt
                   +LiD+VTG+I+hs+ ++ka +   P+h+  V+sENWvVY+Y+ n karr+
    KIAA0090   758 FLIDGVTGRIIHSSVQKKAKG---PVHI--VHSENWVVYQYW-NTKARRN 801  

                   eitviELYEgsepdnkdvwssilstsnklkpvtlfdvplpivksQsYIfp
                   e+tv ELYEg+e++n++++ss+++++            lp+v +QsYIfp
    KIAA0090   802 EFTVLELYEGTEQYNATAFSSLDRPQ------------LPQVLQQSYIFP 839  

                   hsIkalsvTiTerGITsKhiLigLpsGqIleipkaLLdpRRpvesepted
                   +sI+a+++TiTerGITs+h+LigLpsG+Il++pkaLLdpRRp    pte+
    KIAA0090   840 SSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPE--IPTEQ 887  

                   erEEglAIPYtPeipinpnsfiThnqtVyglrgSkIiSaPSnLESTtLVf
                   +rEE+l IPY+P+++i++++fi++nqtV+++rg  I++aPS+LEST+LV+
    KIAA0090   888 SREENL-IPYSPDVQIHAERFINYNQTVSRMRG--IYTAPSGLESTCLVV 934  

                   ayGqlDlFfTRvaPSgtFDiLsddFdkvlLlitifaLlvatyitkplvsk
                   ayG lD+++TRv+PS++FD+L+dd+d+vl++ ++f+L++at+itk+l++ 
    KIAA0090   935 AYG-LDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQV 983  

                   KlLnskW<-*
                   KlLn++W   
    KIAA0090   984 KLLNRAW    990  

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