HUGE

Gene/Protein Characteristic Table for KIAA0100

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00016
Accession No. :	D43947
Description :
HUGO Gene Name :
Clone Name :	ef04121 [Vector Info]
Flexi ORF Clone :	pF1KA0100
Source :
Note :	We replaced ha00902, former representative clones for KIAA0100 with ef04121. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 7393 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 610 bp

Genome contig ID gi51511734r_23865616
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GCAAAATGATTTAAAGAGAAAAAAAAAGATATTTT
Flanking genome sequence
(99983 - 99934)
----+----*----+----*----+----*----+----*----+----*
AAATTTGATGCTCATTTTTGTGTGTGTGTGTTGAGTGCATGCATTCAATC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 17 r 23965599 23996276 39 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 2235 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_001108491	99.1	similar to CG14...	Macaca mulatta
XP_001108432	99.0	similar to CG14...	Macaca mulatta
BAC41111	94.4	unnamed protein...	Mus musculus
AAH75633	94.4	RIKEN cDNA 2610...	Mus musculus
XP_537745	94.9	similar to CG14...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR006231 886 910 PF06039 Malate:quinone-oxidoreductase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006231	886	910	PF06039	Malate:quinone-oxidoreductase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 6 SALLVLLLVALSALFLGRWLVVR 28 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	6	SALLVLLLVALSALFLGRWLVVR	28	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: Stanford G3
Primer_f	: GAACAACCTCCTCCCCAATGC
Primer_r	: CATCATCTTCCACACTTCGGC
PCR product length	: 153 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	610 bp
Genome contig ID	gi51511734r_23865616
PolyA signal sequence (None)	+--------+--------+----*----+---- GCAAAATGATTTAAAGAGAAAAAAAAAGATATTTT
Flanking genome sequence (99983 - 99934)	----+--------+--------+--------+--------+----* AAATTTGATGCTCATTTTTGTGTGTGTGTGTTGAGTGCATGCATTCAATC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	17	r	23965599	23996276	39	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0100

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information