# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00623.fasta.huge -Q ../query/KIAA0108.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0108, 254 aa
 vs ./tmplib.23147 library

1987251 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.7745+/-0.00536; mu= 19.4192+/- 0.367
 mean_var=90.6893+/-20.580, 0's: 0 Z-trim: 1  B-trim: 9 in 2/38
 Lambda= 0.134678

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0085  ( 269 res)   ha01520                     ( 269)  132 34.7  0.0051


>>KIAA0085  ( 269 res)   ha01520                          (269 aa)
 initn: 260 init1: 104 opt: 132  Z-score: 146.0  bits: 34.7 E(): 0.0051
Smith-Waterman score: 249;  25.926% identity (50.741% similar) in 270 aa overlap (34-251:11-266)

            10        20        30          40        50        60 
KIAA01 RVENVCQGPGQEGGPPVTMVSMSFKRNRSDRFYSTR--CCGCCHVRTGTIILGTWYMVVN
                                     :. ..:  :: : .:: .:  :. ......
KIAA00                     RGGDGSTMDPRLSTVRQTCC-CFNVRIATTALAIYHVIMS
                                   10        20         30         

              70         80        90       100       110       120
KIAA01 LLMAILLTVEVTHPN-SMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVY
       .:. :  .:::.: . :    .. :  :..  ::          : . ...::::  :. 
KIAA00 VLLFIEHSVEVAHGKASCKLSQMGYLRIADLISS----------FLLITMLFIISLSLLI
      40        50        60        70                  80         

              130       140       150              160             
KIAA01 GAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP-------RIKEYLDQLP-------
       :... .  .:.::.  ...:..:  :. ..:   ::       : .   ...:       
KIAA00 GVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKLASRSRASSSKFPLMTLQLL
      90       100       110       120       130       140         

                                     170       180       190       
KIAA01 DF-----------------------------PYKDDLLALDSSCLLFIVLVFFALFIIFK
       ::                             : ..:.   .   ...:  . :   .:::
KIAA00 DFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMPHNQFIKMMIIFSIAFITVLIFK
     150       160       170       180       190       200         

       200       210        220       230       240            250 
KIAA01 AYLINCVWNCYKYINNRN-VPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEP-----PPPY
       .:...::: ::. :.  : : :      ..   . :::.:: :...: : :     ::::
KIAA00 VYMFKCVWRCYRLIKCMNSVEEKRNSKMLQ---KVVLPSYEEALSLPSKTPEGGPAPPPY
     210       220       230          240       250       260      

          
KIAA01 LPA
          
KIAA00 SEV
          




254 residues in 1 query   sequences
1987251 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:08:01 2008 done: Thu Dec 18 15:08:01 2008
 Total Scan time:  0.300 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]