hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17354330/chunk_1/iprscan-20080501-17354330.nocrc
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Query sequence: KIAA0108
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03821.6.ls Golgi 4-transmembrane spanning transporter     442.0   7.6e-130   1
PF03821.6.fs Golgi 4-transmembrane spanning transporter     440.2   2.6e-129   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03821.6.fs   1/1      58   254 .]     1   235 []   440.2 2.6e-129
PF03821.6.ls   1/1      58   254 .]     1   235 []   442.0 7.6e-130

Alignments of top-scoring domains:
PF03821.6.fs: domain 1 of 1, from 58 to 254: score 440.2, E = 2.6e-129
                   *->ivmsvLLlIllsVEvAhpkssCklskmgYLRiADLlSSFLLItvlfn
                      +v+++L++Ill+VEv+hp+s+                      +++n
    KIAA0108    58    MVVNLLMAILLTVEVTHPNSM----------------------PAVN 82   

                   islSeLiGvvKNREKYlleFlsdqnmcvllalsvLlgliielpaYgalas
                   i++ e+iG++     Y++e+++d n+cvl+a+svL+++i+++++Yga++ 
    KIAA0108    83 IQY-EVIGNY-----YSSERMAD-NACVLFAVSVLMFIISSMLVYGAIS- 124  

                   RsrraawkiPffcyqLfDFcLsiLvaiSslmyvptileyksqlpmNYfPy
                     ++++w+iPffcy+LfDF+Ls+LvaiSsl+y+p+i+ey++qlp+  fPy
    KIAA0108   125 --YQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPD--FPY 170  

                   qdDvlhvqficLllIvlvffivvLiFKvYLikCVWnCYkyInnrNsseva
                   +dD+l+++++cLl+Ivlvff  ++iFK+YLi+CVWnCYkyInnrN++e+a
    KIAA0108   171 KDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNVPEIA 220  

                   vyskmedPtkvvLPsYEeAlSLPvktPekePpPPylSa<-*
                   vy+++e P+++vLP+YE+A+    k PekePpPPyl+a   
    KIAA0108   221 VYPAFEAPPQYVLPTYEMAV----KMPEKEPPPPYLPA    254  

PF03821.6.ls: domain 1 of 1, from 58 to 254: score 442.0, E = 7.6e-130
                   *->ivmsvLLlIllsVEvAhpkssCklskmgYLRiADLlSSFLLItvlfn
                      +v+++L++Ill+VEv+hp+s+                      +++n
    KIAA0108    58    MVVNLLMAILLTVEVTHPNSM----------------------PAVN 82   

                   islSeLiGvvKNREKYlleFlsdqnmcvllalsvLlgliielpaYgalas
                   i++ e+iG++     Y++e+++d n+cvl+a+svL+++i+++++Yga++ 
    KIAA0108    83 IQY-EVIGNY-----YSSERMAD-NACVLFAVSVLMFIISSMLVYGAIS- 124  

                   RsrraawkiPffcyqLfDFcLsiLvaiSslmyvptileyksqlpmNYfPy
                     ++++w+iPffcy+LfDF+Ls+LvaiSsl+y+p+i+ey++qlp+  fPy
    KIAA0108   125 --YQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPD--FPY 170  

                   qdDvlhvqficLllIvlvffivvLiFKvYLikCVWnCYkyInnrNsseva
                   +dD+l+++++cLl+Ivlvff  ++iFK+YLi+CVWnCYkyInnrN++e+a
    KIAA0108   171 KDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNVPEIA 220  

                   vyskmedPtkvvLPsYEeAlSLPvktPekePpPPylSa<-*
                   vy+++e P+++vLP+YE+A+    k PekePpPPyl+a   
    KIAA0108   221 VYPAFEAPPQYVLPTYEMAV----KMPEKEPPPPYLPA    254  

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