hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17421897/chunk_1/iprscan-20080501-17421897.nocrc
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Query sequence: KIAA0112
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04939.3.ls Ribosome biogenesis regulatory protein (RRS1   438.0   1.2e-128   1
PF04939.3.fs Ribosome biogenesis regulatory protein (RRS1   436.2   4.2e-128   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04939.3.fs   1/1      56   231 ..     1   198 []   436.2 4.2e-128
PF04939.3.ls   1/1      56   231 ..     1   198 []   438.0 1.2e-128

Alignments of top-scoring domains:
PF04939.3.fs: domain 1 of 1, from 56 to 231: score 436.2, E = 4.2e-128
                   *->ksitVEkeielqfDLGNLLafDrNPldelkksdpsslreekeEiLte
                      ++itV+ke+elqfDLGNLLa+DrNP+++l++++p++  e++   L++
    KIAA0112    56    QRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTP--EAE---LQA 97   

                   LtRdNvQlLvNklwsLPterveEgiGGtGGqssvmtivqLPePTTrLPRe
                   L+RdN+QlL+N+lw+LPterveE+i           +++LPePTTrLPRe
    KIAA0112    98 LARDNTQLLINQLWQLPTERVEEAI-----------VARLPEPTTRLPRE 136  

                   KpLPkPKPlTKWEkFArkKGIkkKKKeGKlVyDEasgeWvPkwGYkRank
                   KpLP+P+PlT+W++FAr+KGI++KKK+ +lV+DE+sg+W+++wGY+Ra+ 
    KIAA0112   137 KPLPRPRPLTRWQQFARLKGIRPKKKT-NLVWDEVSGQWRRRWGYQRAR- 184  

                   ddtkdWLiEVPdNAKesddPlvDpFakridkkKerVaKNEknRlkNlkrA
                   ddtk+WLiEVP+NA    dPl+D+Fakri++kKerVaKNE+nRl+Nl+rA
    KIAA0112   185 DDTKEWLIEVPGNA----DPLEDQFAKRIQAKKERVAKNELNRLRNLARA 230  

                   k<-*
                   +   
    KIAA0112   231 H    231  

PF04939.3.ls: domain 1 of 1, from 56 to 231: score 438.0, E = 1.2e-128
                   *->ksitVEkeielqfDLGNLLafDrNPldelkksdpsslreekeEiLte
                      ++itV+ke+elqfDLGNLLa+DrNP+++l++++p++  e++   L++
    KIAA0112    56    QRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTP--EAE---LQA 97   

                   LtRdNvQlLvNklwsLPterveEgiGGtGGqssvmtivqLPePTTrLPRe
                   L+RdN+QlL+N+lw+LPterveE+i           +++LPePTTrLPRe
    KIAA0112    98 LARDNTQLLINQLWQLPTERVEEAI-----------VARLPEPTTRLPRE 136  

                   KpLPkPKPlTKWEkFArkKGIkkKKKeGKlVyDEasgeWvPkwGYkRank
                   KpLP+P+PlT+W++FAr+KGI++KKK+ +lV+DE+sg+W+++wGY+Ra+ 
    KIAA0112   137 KPLPRPRPLTRWQQFARLKGIRPKKKT-NLVWDEVSGQWRRRWGYQRAR- 184  

                   ddtkdWLiEVPdNAKesddPlvDpFakridkkKerVaKNEknRlkNlkrA
                   ddtk+WLiEVP+NA    dPl+D+Fakri++kKerVaKNE+nRl+Nl+rA
    KIAA0112   185 DDTKEWLIEVPGNA----DPLEDQFAKRIQAKKERVAKNELNRLRNLARA 230  

                   k<-*
                   +   
    KIAA0112   231 H    231  

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