# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha00680.fasta.nr -Q ../query/KIAA0114.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0114, 79 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827519 sequences Expectation_n fit: rho(ln(x))= 4.7345+/-0.000179; mu= 5.3731+/- 0.010 mean_var=58.2930+/-11.362, 0's: 55 Z-trim: 55 B-trim: 0 in 0/66 Lambda= 0.167983 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119625843|gb|EAX05438.1| hCG2036618, isoform CR ( 218) 327 86.7 1.1e-15 >>gi|119625843|gb|EAX05438.1| hCG2036618, isoform CRA_b (218 aa) initn: 327 init1: 327 opt: 327 Z-score: 437.9 bits: 86.7 E(): 1.1e-15 Smith-Waterman score: 405; 58.955% identity (58.955% similar) in 134 aa overlap (1-79:85-218) 10 20 30 KIAA01 GVARADAPLCSGFRAGHACGTGTQPQPTLS :::::::::::::::::::::::::::::: gi|119 GPRDPPASLPAPRRLSGLCARRRSQASLSAGVARADAPLCSGFRAGHACGTGTQPQPTLS 60 70 80 90 100 110 40 KIAA01 SRSSSLTSAEVQLPQFLAQ----------------------------------------- ::::::::::::::::::: gi|119 SRSSSLTSAEVQLPQFLAQCGFRLREAEIHEVLRATRKIVVNPVKIKEKKSQSTLSCALL 120 130 140 150 160 170 50 60 70 KIAA01 --------------VDNYRHKPLKLECPVAGISIDLSQLSLQLQ :::::::::::::::::::::::::::::: gi|119 RLTQCFKRLTQKGKVDNYRHKPLKLECPVAGISIDLSQLSLQLQ 180 190 200 210 79 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 21:56:32 2009 done: Tue Mar 3 22:04:04 2009 Total Scan time: 956.710 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]