# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha00793.fasta.nr -Q ../query/KIAA0118.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0118, 161 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7816520 sequences Expectation_n fit: rho(ln(x))= 4.7720+/-0.00018; mu= 8.5550+/- 0.010 mean_var=65.0791+/-12.756, 0's: 40 Z-trim: 122 B-trim: 0 in 0/66 Lambda= 0.158984 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|109097798|ref|XP_001117520.1| PREDICTED: simila ( 223) 1082 256.3 2e-66 gi|114645863|ref|XP_522469.2| PREDICTED: similar t ( 224) 1082 256.3 2e-66 gi|13633613|sp|Q9UL25.3|RAB21_HUMAN RecName: Full= ( 225) 1082 256.3 2e-66 gi|2500067|sp|P55745.3|RAB21_CANFA RecName: Full=R ( 223) 1074 254.4 7.2e-66 gi|149743106|ref|XP_001490458.1| PREDICTED: simila ( 181) 1069 253.2 1.4e-65 gi|122144675|sp|Q17R06.1|RAB21_BOVIN RecName: Full ( 222) 1066 252.6 2.6e-65 gi|194037756|ref|XP_001925094.1| PREDICTED: simila ( 222) 1064 252.1 3.5e-65 gi|81884468|sp|Q6AXT5.1|RAB21_RAT RecName: Full=Ra ( 223) 1049 248.7 3.9e-64 gi|46577689|sp|P35282.4|RAB21_MOUSE RecName: Full= ( 222) 1042 247.1 1.2e-63 gi|118082329|ref|XP_001233648.1| PREDICTED: simila ( 220) 1036 245.7 3e-63 gi|126339429|ref|XP_001370428.1| PREDICTED: simila ( 227) 1033 245.0 5e-63 gi|38014530|gb|AAH60498.1| MGC68816 protein [Xenop ( 221) 1011 240.0 1.6e-61 gi|89266851|emb|CAJ82566.1| RAB21, member RAS onco ( 221) 1011 240.0 1.6e-61 gi|115313619|gb|AAI24523.1| Zgc:154045 [Danio reri ( 216) 975 231.7 4.8e-59 gi|47212281|emb|CAF89513.1| unnamed protein produc ( 217) 958 227.8 7.2e-58 gi|73535743|pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 ( 170) 792 189.6 1.7e-46 gi|73535747|pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 ( 170) 792 189.6 1.7e-46 gi|73535741|pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 ( 184) 792 189.7 1.9e-46 gi|198418761|ref|XP_002119635.1| PREDICTED: simila ( 218) 759 182.2 4e-44 gi|190579637|gb|EDV19728.1| hypothetical protein T ( 209) 752 180.5 1.2e-43 gi|156213990|gb|EDO34991.1| predicted protein [Nem ( 216) 751 180.3 1.4e-43 gi|215493921|gb|EEC03562.1| RAS-related protein, p ( 215) 741 178.0 6.9e-43 gi|72132814|ref|XP_793125.1| PREDICTED: similar to ( 180) 728 175.0 4.8e-42 gi|149898836|gb|ABR27886.1| Ras-related small GTPa ( 218) 718 172.8 2.7e-41 gi|193654889|ref|XP_001948825.1| PREDICTED: simila ( 226) 707 170.3 1.6e-40 gi|156547415|ref|XP_001604485.1| PREDICTED: simila ( 222) 702 169.1 3.5e-40 gi|119920369|ref|XP_001249324.1| PREDICTED: hypoth ( 106) 693 166.8 8.3e-40 gi|91078236|ref|XP_966494.1| PREDICTED: similar to ( 216) 681 164.3 9.6e-39 gi|115974731|ref|XP_001195400.1| PREDICTED: simila ( 157) 673 162.3 2.7e-38 gi|30580479|sp|Q8WQ53|RAB21_GEOCY Ras-related prot ( 229) 664 160.4 1.5e-37 gi|212517295|gb|EEB19206.1| rab21, putative [Pedic ( 218) 655 158.3 6.1e-37 gi|89258431|gb|ABD65439.1| Rab21 [Suberites domunc ( 222) 632 153.0 2.4e-35 gi|304604|gb|AAC37383.1| RabB gi|739977|prf||2 ( 213) 629 152.3 3.7e-35 gi|166208512|sp|P34142.2|RAB21_DICDI RecName: Full ( 212) 618 149.8 2.1e-34 gi|66548006|ref|XP_393353.2| PREDICTED: similar to ( 222) 599 145.5 4.5e-33 gi|162682061|gb|EDQ68482.1| Rab21-family small GTP ( 222) 547 133.5 1.8e-29 gi|162685267|gb|EDQ71663.1| Rab21-family small GTP ( 208) 537 131.2 8.2e-29 gi|190617160|gb|EDV32684.1| GF22152 [Drosophila an ( 225) 524 128.3 6.9e-28 gi|30923579|gb|EAA46056.1| Rab21, isoform A [Droso ( 189) 522 127.8 8.3e-28 gi|220901851|gb|EAA46055.3| Rab21, isoform C [Dros ( 222) 522 127.8 9.4e-28 gi|21429138|gb|AAM50288.1| RE42508p [Drosophila me ( 222) 522 127.8 9.4e-28 gi|194129619|gb|EDW51662.1| GM10050 [Drosophila se ( 224) 522 127.8 9.4e-28 gi|193908415|gb|EDW07282.1| GI14949 [Drosophila mo ( 222) 521 127.6 1.1e-27 gi|194149713|gb|EDW65404.1| GJ18919 [Drosophila vi ( 229) 521 127.6 1.1e-27 gi|190650402|gb|EDV47680.1| GG17497 [Drosophila er ( 222) 518 126.9 1.8e-27 gi|221126548|ref|XP_002167019.1| PREDICTED: simila ( 138) 515 126.0 2e-27 gi|194189572|gb|EDX03156.1| GE15254 [Drosophila ya ( 222) 517 126.7 2.1e-27 gi|162683434|gb|EDQ69844.1| Rab21-family small GTP ( 208) 516 126.4 2.3e-27 gi|158596123|gb|EDP34522.1| ras-related protein Ra ( 219) 516 126.4 2.4e-27 gi|194104976|gb|EDW27019.1| GL16463 [Drosophila pe ( 223) 516 126.4 2.4e-27 >>gi|109097798|ref|XP_001117520.1| PREDICTED: similar to (223 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1348.6 bits: 256.3 E(): 2e-66 Smith-Waterman score: 1082; 100.000% identity (100.000% similar) in 161 aa overlap (1-161:63-223) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|109 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG ::::::::::: gi|109 QTSGGGCCSSG 220 >>gi|114645863|ref|XP_522469.2| PREDICTED: similar to GT (224 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1348.6 bits: 256.3 E(): 2e-66 Smith-Waterman score: 1082; 100.000% identity (100.000% similar) in 161 aa overlap (1-161:64-224) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|114 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG ::::::::::: gi|114 QTSGGGCCSSG 220 >>gi|13633613|sp|Q9UL25.3|RAB21_HUMAN RecName: Full=Ras- (225 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1348.6 bits: 256.3 E(): 2e-66 Smith-Waterman score: 1082; 100.000% identity (100.000% similar) in 161 aa overlap (1-161:65-225) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|136 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG ::::::::::: gi|136 QTSGGGCCSSG 220 >>gi|2500067|sp|P55745.3|RAB21_CANFA RecName: Full=Ras-r (223 aa) initn: 1074 init1: 1074 opt: 1074 Z-score: 1338.7 bits: 254.4 E(): 7.2e-66 Smith-Waterman score: 1074; 98.758% identity (100.000% similar) in 161 aa overlap (1-161:63-223) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|250 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|250 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGAARRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG :.::::::::: gi|250 QSSGGGCCSSG 220 >>gi|149743106|ref|XP_001490458.1| PREDICTED: similar to (181 aa) initn: 1069 init1: 1069 opt: 1069 Z-score: 1333.8 bits: 253.2 E(): 1.4e-65 Smith-Waterman score: 1069; 98.137% identity (100.000% similar) in 161 aa overlap (1-161:21-181) 10 20 30 40 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE :::::::::::::::::::::::::::::::::::::::: gi|149 MISSSVLTRASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE 10 20 30 40 50 60 50 60 70 80 90 100 KIAA01 DSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 70 80 90 100 110 120 110 120 130 140 150 160 KIAA01 QNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSS :::::::::::::::::::::::::::::::::::.:::::::::::::::..::::::: gi|149 QNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGAARRGVQIIDDEPQAQSGGGGCCSS 130 140 150 160 170 180 KIAA01 G : gi|149 G >>gi|122144675|sp|Q17R06.1|RAB21_BOVIN RecName: Full=Ras (222 aa) initn: 1066 init1: 1066 opt: 1066 Z-score: 1328.8 bits: 252.6 E(): 2.6e-65 Smith-Waterman score: 1066; 97.516% identity (99.379% similar) in 161 aa overlap (1-161:62-222) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|122 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|122 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|122 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGAARRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG :. :::::::: gi|122 QSVGGGCCSSG 220 >>gi|194037756|ref|XP_001925094.1| PREDICTED: similar to (222 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1326.4 bits: 252.1 E(): 3.5e-65 Smith-Waterman score: 1064; 97.516% identity (100.000% similar) in 161 aa overlap (1-161:62-222) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|194 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA :::::::::::::::::::::::::::::::::::::::::::::..::::::::::::: gi|194 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGATRRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG :..:::::::: gi|194 QSGGGGCCSSG 220 >>gi|81884468|sp|Q6AXT5.1|RAB21_RAT RecName: Full=Ras-re (223 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1307.7 bits: 248.7 E(): 3.9e-64 Smith-Waterman score: 1049; 96.273% identity (99.379% similar) in 161 aa overlap (1-161:63-223) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|818 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 AILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA ::::::::::::::::::::::::::::::::::::::::::: :.:::::::::::::: gi|818 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQAGAARRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG :...::::::: gi|818 QSGSGGCCSSG 220 >>gi|46577689|sp|P35282.4|RAB21_MOUSE RecName: Full=Ras- (222 aa) initn: 1024 init1: 1024 opt: 1042 Z-score: 1299.1 bits: 247.1 E(): 1.2e-63 Smith-Waterman score: 1042; 96.894% identity (98.758% similar) in 161 aa overlap (1-161:63-222) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|465 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 AILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA ::::::::::::::::::::::::::::::::::::::::::: :.:::::::::::::: gi|465 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQAGAARRGVQIIDDEPQA 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG :.::: ::::: gi|465 QSSGG-CCSSG 220 >>gi|118082329|ref|XP_001233648.1| PREDICTED: similar to (220 aa) initn: 1018 init1: 1018 opt: 1036 Z-score: 1291.7 bits: 245.7 E(): 3e-63 Smith-Waterman score: 1036; 95.652% identity (98.758% similar) in 161 aa overlap (1-161:61-220) 10 20 30 KIAA01 GKRVNLAIWDTAGQERFHALGPIYYRDSNG :::::::::::::::::::::::::::::: gi|118 LVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 40 50 60 70 80 90 40 50 60 70 80 90 KIAA01 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV :::::::::::::::::::::::::::::::::::::::::::::::::.::::.::::: gi|118 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSVQEAETYAESV 100 110 120 130 140 150 100 110 120 130 140 150 KIAA01 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQA ::::::::::::::::::::::::::::::::::::.:::::: :::::::::::::::. gi|118 GAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERARGNGSSQSGTARRGVQIIDDEPQV 160 170 180 190 200 210 160 KIAA01 QTSGGGCCSSG :.::: ::::: gi|118 QSSGG-CCSSG 220 161 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 22:20:25 2009 done: Tue Mar 3 22:27:03 2009 Total Scan time: 1171.380 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]