hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17520093/chunk_1/iprscan-20080501-17520093.nocrc
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Query sequence: KIAA0118
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00071.12.fs Ras family                                     195.0    7.8e-58   1
PF00071.12.ls Ras family                                     135.5    1.3e-37   1
PF08477.3.fs Miro-like protein                               46.3    5.1e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00071.12.fs   1/1       1   118 [.    45   174 .]   195.0  7.8e-58
PF00071.12.ls   1/1       1   118 [.     1   174 []   135.5  1.3e-37
PF08477.3.fs   1/1       6    71 ..    69   139 .]    46.3  5.1e-13

Alignments of top-scoring domains:
PF00071.12.fs: domain 1 of 1, from 1 to 118: score 195.0, E = 7.8e-58
                   *->gktvkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvk
                      gk+v L IWDTAGQErF+al p YYR+++G++LVYDIT++dSF++vk
    KIAA0118     1    GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 47   

                   kWleeilrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGeal
                   +W++e++++ +  + +  ++VGNK+DLe          +R Vs +e+e +
    KIAA0118    48 NWVKELRKMLG--NEICLCIVGNKIDLEK---------ERHVSIQEAESY 86   

                   AkelgAlpFmETSAKtneNVeeaFeelareilk<-*
                   A++ g ++++ TSAK+n+++ee F++l +++++   
    KIAA0118    87 AESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE    118  

PF00071.12.ls: domain 1 of 1, from 1 to 118: score 135.5, E = 1.3e-37
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                                                                  gk+
    KIAA0118     1    --------------------------------------------GKR 3    

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   v L IWDTAGQErF+al p YYR+++G++LVYDIT++dSF++vk+W++e+
    KIAA0118     4 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 53   

                   lrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAkelgA
                   +++ +  + +  ++VGNK+DLe          +R Vs +e+e +A++ g 
    KIAA0118    54 RKMLG--NEICLCIVGNKIDLEK---------ERHVSIQEAESYAESVG- 91   

                   lpFmETSAKtneNVeeaFeelareilk<-*
                   ++++ TSAK+n+++ee F++l +++++   
    KIAA0118    92 AKHYHTSAKQNKGIEELFLDLCKRMIE    118  

PF08477.3.fs: domain 1 of 1, from 6 to 71: score 46.3, E = 5.1e-13
                   *->lilwDtggreelkfehepiAymktaDavllvyDlsdpeSfervssli
                      l +wDt+g+e++++ + pi y  ++++++lvyD +d++Sf+ v   +
    KIAA0118     6    LAIWDTAGQERFHA-LGPI-YYRDSNGAILVYDITDEDSFQKV---K 47   

                   kwlpnlrklgkkaiPvilvgnKlD<-*
                    w ++lrk  +++i + +vgnK+D   
    KIAA0118    48 NWVKELRKMLGNEICLCIVGNKID    71   

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