HUGE

Gene/Protein Characteristic Table for KIAA0130

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05962
Accession No. :	D50920
Description :	Thyroid hormone receptor-associated protein complex 100 kDa component.
HUGO Gene Name :	mediator complex subunit 24 (MED24)
Clone Name :	ha01208 [Vector Info]
Flexi ORF Clone :	pF1KA0130
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 3468 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 425 bp

Genome contig ID gi51511734r_35328881
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
GTTCATGTATAAATAAAGCTCCTCGTGGCTCCCTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TGTGACTGTGTGTGCTGTTGGTATTGGTGCCACCCGGGGCAGGGCATAGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 17 r 35428881 35464175 26 99.8 Perfect prediction

Features of the protein sequence	Description

Length: 1006 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW60629	99.8	thyroid hormone...	Homo sapiens
XP_511466	99.8	thyroid hormone...	Pan troglodytes
EAW60631	99.8	thyroid hormone...	Homo sapiens
XP_001170999	99.8	thyroid hormone...	Pan troglodytes
BAG11138	100.0	thyroid hormone...	synthetic construct

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 629 KVCSLAVCAVAWLVAHVRMLG 649 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	629	KVCSLAVCAVAWLVAHVRMLG	649	PRIMARY	21

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: TCCTGCTCATCTCCTCCATCC
Primer_r	: GACACCTTCACCAGTTCCGAC
PCR product length	: 163 (0.3k) bp
PCR conditions	: 95 °C15 sec68 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	425 bp
Genome contig ID	gi51511734r_35328881
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- GTTCATGTATAAATAAAGCTCCTCGTGGCTCCCTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TGTGACTGTGTGTGCTGTTGGTATTGGTGCCACCCGGGGCAGGGCATAGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	17	r	35428881	35464175	26	99.8	Perfect prediction

Gene/Protein Characteristic Table for KIAA0130

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information