hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/smart.HMMs
Sequence file:            /cdna/full/goal/ha/ha01449s1/w3open/interpro/cnk_1/seq.in
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Query:  ha01449s1  637

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       105.8      5e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      90   192 ..     1   114 []   105.8    5e-27

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 90 to 192: score 105.8, E = 5e-27
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvtl+v+ ++    a+  +f a  Hk+vLa++   Sp+Fka+f+++
   ha01449s1    90    CDVTLQVKYQD----APAAQFMA--HKVVLASS---SPVFKAMFTNg 127  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++++ + + +++      ++p++++ l++f Yt ++++ e+   +v+++
   ha01449s1   128 lreqgmevVSIEG------IHPKVMERLIEFAYTaSISMGEK---CVLHV 168  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   +  A ++    qi+++v++C +fl+++l   
   ha01449s1   169 MNGAVMY----QIDsVVRACSDFLVQQL    192  

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