hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080909/iprscan-20080909-09320184/chunk_1/iprscan-20080909-09320184.nocrc
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Query sequence: KIAA0136
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF07496.5.fs CW-type Zinc Finger                            80.6    1.5e-23   1
PF07496.5.ls CW-type Zinc Finger                            82.5    1.2e-21   1
PF02518.16.fs Histidine kinase-, DNA gyrase B-, and HSP90    15.1    0.00078   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF02518.16.fs   1/1      35    97 ..     1    69 [.    15.1  0.00078
PF07496.5.fs   1/1     419   464 ..     1    55 []    80.6  1.5e-23
PF07496.5.ls   1/1     419   464 ..     1    55 []    82.5  1.2e-21

Alignments of top-scoring domains:
PF02518.16.fs: domain 1 of 1, from 35 to 97: score 15.1, E = 0.00078
                   *->gdedrLrqvlsNLldNAikhapaggeitvrlerdgdrlritVeDnGp
                      +  ++   ++ +L+dNA +     ++i++  +  +d++++t +DnG 
    KIAA0136    35    TSHTWPFSAVAELIDNAYDPDVNAKQIWIDKTVINDHICLTFTDNGN 81   

                   GIppehkisaedleriFepFyr<-*
                   G++       ++l +++  +++   
    KIAA0136    82 GMTS------DKLHKMLSFGFS    97   

PF07496.5.fs: domain 1 of 1, from 419 to 464: score 80.6, E = 1.5e-23
                   *->pyWVQCdPkClKWRrLPkeinyedIREkllpdkWfCsmNpwdkeyns
                      ++WVQCd  ClKWR+LP+ +   d     lp+kW+Cs+Np d+++++
    KIAA0136   419    QTWVQCD-ACLKWRKLPDGM---D----QLPEKWYCSNNP-DPQFRN 456  

                   CedpEele<-*
                   Ce+pEe e   
    KIAA0136   457 CEVPEEPE    464  

PF07496.5.ls: domain 1 of 1, from 419 to 464: score 82.5, E = 1.2e-21
                   *->pyWVQCdPkClKWRrLPkeinyedIREkllpdkWfCsmNpwdkeyns
                      ++WVQCd  ClKWR+LP+ +   d     lp+kW+Cs+Np d+++++
    KIAA0136   419    QTWVQCD-ACLKWRKLPDGM---D----QLPEKWYCSNNP-DPQFRN 456  

                   CedpEele<-*
                   Ce+pEe e   
    KIAA0136   457 CEVPEEPE    464  

//