hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18264119/chunk_1/iprscan-20080501-18264119.nocrc
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Query sequence: KIAA0139
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01399.17.fs PCI domain                                      60.8    2.2e-16   1
PF01399.17.ls PCI domain                                      62.6    1.2e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01399.17.fs   1/1     371   501 ..     1   135 []    60.8  2.2e-16
PF01399.17.ls   1/1     371   501 ..     1   135 []    62.6  1.2e-15

Alignments of top-scoring domains:
PF01399.17.fs: domain 1 of 1, from 371 to 501: score 60.8, E = 2.2e-16
                   *->payrdLleafysgd.lsdfeeiladh.................vm.A
                      p  + L++ +++ + l+ ++ +++d+ +  + + ++ +  ++ ++ +
    KIAA0139   371    PTRIGLINDMVRFNvLQYVVPEVKDLynwlevefnplklcervTKvL 417  

                   .KalkGwqkkeellldpglaekvwlegdkhledLrrkirelnlrrlakft
                   +++      +e+  + p l++        ++++L++++++++l+++++  
    KIAA0139   418 nWV------REQPEKEPELQQ--------YVPQLQNNTILRLLQQVSQ-- 451  

                   ysapYssislsdlakllglsvvedvlqdevEkilsklIrdglirgkIDqv
                      +Y+si++s+l +l+ +  +      ++E+ ++++ r   ++ +ID+ 
    KIAA0139   452 ---IYQSIEFSRLTSLVPFVDA-----FQLERAIVDAARHCDLQVRIDHT 493  

                   ngivvvse<-*
                   ++++ +     
    KIAA0139   494 SRTLSFGS    501  

PF01399.17.ls: domain 1 of 1, from 371 to 501: score 62.6, E = 1.2e-15
                   *->payrdLleafysgd.lsdfeeiladh.................vm.A
                      p  + L++ +++ + l+ ++ +++d+ +  + + ++ +  ++ ++ +
    KIAA0139   371    PTRIGLINDMVRFNvLQYVVPEVKDLynwlevefnplklcervTKvL 417  

                   .KalkGwqkkeellldpglaekvwlegdkhledLrrkirelnlrrlakft
                   +++      +e+  + p l++        ++++L++++++++l+++++  
    KIAA0139   418 nWV------REQPEKEPELQQ--------YVPQLQNNTILRLLQQVSQ-- 451  

                   ysapYssislsdlakllglsvvedvlqdevEkilsklIrdglirgkIDqv
                      +Y+si++s+l +l+ +  +      ++E+ ++++ r   ++ +ID+ 
    KIAA0139   452 ---IYQSIEFSRLTSLVPFVDA-----FQLERAIVDAARHCDLQVRIDHT 493  

                   ngivvvse<-*
                   ++++ +     
    KIAA0139   494 SRTLSFGS    501  

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