HUGE

Gene/Protein Characteristic Table for KIAA0140

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00424
Accession No. :	D50930
Description :	Protein FAM53B.
HUGO Gene Name :
Clone Name :	ha00520 [Vector Info]
Flexi ORF Clone :	pF1KSDA0140
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 5429 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3948 bp

Genome contig ID gi89161187r_126197853
PolyA signal sequence
(AATAAA,-25)
+----*----+----*----+----*----+----
GTACTGTGTAAATAAAGCTTCCTGGTTCAATACCC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGTGCCTGGTGCCAGCTGTGTGGTTTCTGTTGGGTGTGGTGAACTGGCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 r 126297853 126422609 5 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 439 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG09619	2.9e-175	100.0	FAM53B protein ...	synthetic construct
Q14153	6e-175	99.8	Protein FAM53B.	Homo sapiens
XP_001083541	1.2e-169	97.2	hypothetical pr...	Macaca mulatta
Q8BGR5	1.1e-147	85.1	Protein FAM53B.	Mus musculus
XP_854058	1.2e-145	88.2	hypothetical pr...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: TAATGGCAGACCGAAGTGGAG
Primer_r	: GCCTATGTGCTATCTGTCGCC
PCR product length	: 140 bp
PCR conditions	: 95 °C15 sec62 °C120 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3948 bp
Genome contig ID	gi89161187r_126197853
PolyA signal sequence (AATAAA,-25)	+--------+--------+----*----+---- GTACTGTGTAAATAAAGCTTCCTGGTTCAATACCC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAGTGCCTGGTGCCAGCTGTGTGGTTTCTGTTGGGTGTGGTGAACTGGCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	r	126297853	126422609	5	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0140

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information