hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18300087/chunk_1/iprscan-20080501-18300087.nocrc
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Query sequence: KIAA0141
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08238.2.ls Sel1 repeat                                    121.0    3.1e-33   5
PF08238.2.fs Sel1 repeat                                    112.9    5.2e-32   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08238.2.ls   1/5     266   297 ..     1    58 []    13.6      0.3
PF08238.2.fs   1/5     281   297 ..    40    58 .]    11.9   0.0094
PF08238.2.fs   2/5     298   333 ..     1    58 []    46.4  9.7e-13
PF08238.2.ls   2/5     298   333 ..     1    58 []    48.0    3e-11
PF08238.2.ls   3/5     334   371 ..     1    58 []    11.5     0.54
PF08238.2.fs   4/5     372   405 ..     1    58 []    10.5    0.024
PF08238.2.ls   4/5     372   405 ..     1    58 []    12.1     0.46
PF08238.2.fs   5/5     406   441 ..     1    58 []    34.2  3.2e-09
PF08238.2.ls   5/5     406   441 ..     1    58 []    35.8  1.4e-07

Alignments of top-scoring domains:
PF08238.2.ls: domain 1 of 5, from 266 to 297: score 13.6, E = 0.3
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      + A + LG          ++        G           D+    A
    KIAA0141   266    SiAFNFLG-------TENMKS-------G-----------DHTA--A 285  

                   lkwyekAAeqGn<-*
                   + +++kAA++G+   
    KIAA0141   286 FSYFQKAAARGY    297  

PF08238.2.fs: domain 1 of 5, from 281 to 297: score 11.9, E = 0.0094
                   *->DyekveAlkwyekAAeqGn<-*
                      D+    A+ +++kAA++G+   
    KIAA0141   281    DHTA--AFSYFQKAAARGY    297  

PF08238.2.fs: domain 2 of 5, from 298 to 333: score 46.4, E = 9.7e-13
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      ++Aqyn G       +++++G+      G  +p+      D+ k  A
    KIAA0141   298    SkAQYNAG-------LCHEHGR------G--TPR------DISK--A 321  

                   lkwyekAAeqGn<-*
                   + +y++AA qG+   
    KIAA0141   322 VLYYQLAASQGH    333  

PF08238.2.ls: domain 2 of 5, from 298 to 333: score 48.0, E = 3e-11
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      ++Aqyn G       +++++G+      G  +p+      D+ k  A
    KIAA0141   298    SkAQYNAG-------LCHEHGR------G--TPR------DISK--A 321  

                   lkwyekAAeqGn<-*
                   + +y++AA qG+   
    KIAA0141   322 VLYYQLAASQGH    333  

PF08238.2.ls: domain 3 of 5, from 334 to 371: score 11.5, E = 0.54
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      + Aqy+++r    +++  ++                    ++e++ A
    KIAA0141   334    SlAQYRYAR----CLL--RDPA---------SSW------NPERQRA 359  

                   lkwyekAAeqGn<-*
                   + ++++AA+ G    
    KIAA0141   360 VSLLKQAADSGL    371  

PF08238.2.fs: domain 4 of 5, from 372 to 405: score 10.5, E = 0.024
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       +Aq  LG+    l+    + +                  D ++  A
    KIAA0141   372    ReAQAFLGV----LFT--KEPY---------L--------DEQR--A 393  

                   lkwyekAAeqGn<-*
                   +k++ +AA++G+   
    KIAA0141   394 VKYLWLAANNGD    405  

PF08238.2.ls: domain 4 of 5, from 372 to 405: score 12.1, E = 0.46
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       +Aq  LG+    l+    + +                  D ++  A
    KIAA0141   372    ReAQAFLGV----LFT--KEPY---------L--------DEQR--A 393  

                   lkwyekAAeqGn<-*
                   +k++ +AA++G+   
    KIAA0141   394 VKYLWLAANNGD    405  

PF08238.2.fs: domain 5 of 5, from 406 to 441: score 34.2, E = 3.2e-09
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      +++ y LG        +y++Gl      G  v +      ++ +  A
    KIAA0141   406    SqSRYHLG-------ICYEKGL------G--VQR------NLGE--A 429  

                   lkwyekAAeqGn<-*
                   l++y+++A++Gn   
    KIAA0141   430 LRCYQQSAALGN    441  

PF08238.2.ls: domain 5 of 5, from 406 to 441: score 35.8, E = 1.4e-07
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      +++ y LG        +y++Gl      G  v +      ++ +  A
    KIAA0141   406    SqSRYHLG-------ICYEKGL------G--VQR------NLGE--A 429  

                   lkwyekAAeqGn<-*
                   l++y+++A++Gn   
    KIAA0141   430 LRCYQQSAALGN    441  

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