hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18300087/chunk_1/iprscan-20080501-18300087.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0141 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00671 120.2 2.2e-31 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00671 1/5 266 297 .. 1 43 [] 1.9 2.2e+02 SM00671 2/5 298 333 .. 1 43 [] 53.8 2.2e-11 SM00671 3/5 334 371 .. 1 43 [] 4.0 1.3e+02 SM00671 4/5 372 405 .. 1 43 [] 16.4 4 SM00671 5/5 406 441 .. 1 43 [] 44.1 1.9e-08 Alignments of top-scoring domains: SM00671: domain 1 of 5, from 266 to 297: score 1.9, E = 2.2e+02 *->aeAqynLGqmYeyGlenpngklGvpkDyekAleyykkAAeqGh<-* + A + LG ++ D+ A+ y++kAA+ G+ KIAA0141 266 SIAFNFLGTENMKSG-----------DHTAAFSYFQKAAARGY 297 SM00671: domain 2 of 5, from 298 to 333: score 53.8, E = 2.2e-11 *->aeAqynLGqmYeyGlenpngklGvpkDyekAleyykkAAeqGh<-* ++Aqyn G ++e+G+ G+p+D kA+ yy++AA+qGh KIAA0141 298 SKAQYNAGLCHEHGR-------GTPRDISKAVLYYQLAASQGH 333 SM00671: domain 3 of 5, from 334 to 371: score 4.0, E = 1.3e+02 *->aeAqynLGqmYeyGlenpngklGvpkDyekAleyykkAAeqGh<-* + Aqy+ +++ ++ + + A+ ++k+AA+ G KIAA0141 334 SLAQYRYARCLLRDP-----ASSWNPERQRAVSLLKQAADSGL 371 SM00671: domain 4 of 5, from 372 to 405: score 16.4, E = 4 *->aeAqynLGqmYeyGlenpngklGvpkDyekAleyykkAAeqGh<-* eAq LG+++ + D++ A++y+ +AA++G+ KIAA0141 372 REAQAFLGVLFTKEP---------YLDEQRAVKYLWLAANNGD 405 SM00671: domain 5 of 5, from 406 to 441: score 44.1, E = 1.9e-08 *->aeAqynLGqmYeyGlenpngklGvpkDyekAleyykkAAeqGh<-* +++ y+LG++Ye+Gl Gv +++ +Al++y+++A++G+ KIAA0141 406 SQSRYHLGICYEKGL-------GVQRNLGEALRCYQQSAALGN 441 //