hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18313776/chunk_1/iprscan-20080501-18313776.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0142 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00018.18.ls SH3 domain 92.5 1.2e-24 1 PF00018.18.fs SH3 domain 90.6 4.4e-24 1 PF00621.11.fs RhoGEF domain 82.1 4.8e-24 1 PF00621.11.ls RhoGEF domain 83.8 4.8e-22 1 PF07653.7.fs Variant SH3 domain 71.1 7.8e-20 1 PF07653.7.ls Variant SH3 domain 72.8 9.8e-19 1 PF00169.19.fs PH domain 58.7 2.1e-17 1 PF00169.19.ls PH domain 60.7 4.4e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/1 165 219 .. 1 59 [] 92.5 1.2e-24 PF00018.18.fs 1/1 165 219 .. 1 59 [] 90.6 4.4e-24 PF07653.7.fs 1/1 166 219 .. 1 69 [] 71.1 7.8e-20 PF07653.7.ls 1/1 166 219 .. 1 69 [] 72.8 9.8e-19 PF00621.11.ls 1/1 253 428 .. 1 207 [] 83.8 4.8e-22 PF00621.11.fs 1/1 253 428 .. 1 207 [] 82.1 4.8e-24 PF00169.19.fs 1/1 458 556 .. 1 92 [] 58.7 2.1e-17 PF00169.19.ls 1/1 458 556 .. 1 92 [] 60.7 4.4e-15 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 1, from 165 to 219: score 92.5, E = 1.2e-24 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +v+A++ ++++++dELsF kGDvi+v +++ gWW+g l+ G+ KIAA0142 165 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTLN---GR 207 eGliPsNYVepv<-* +G++PsNYV++v KIAA0142 208 TGWFPSNYVREV 219 PF00018.18.fs: domain 1 of 1, from 165 to 219: score 90.6, E = 4.4e-24 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +v+A++ ++++++dELsF kGDvi+v +++ gWW+g l+ G+ KIAA0142 165 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTLN---GR 207 eGliPsNYVepv<-* +G++PsNYV++v KIAA0142 208 TGWFPSNYVREV 219 PF07653.7.fs: domain 1 of 1, from 166 to 219: score 71.1, E = 7.8e-20 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++ra +++ t+++e Ls+ kGdv++V+ + +gwwe KIAA0142 166 VVRAKFNFQQ-TNEDE------LSFSKGDVIHVT----RVEEGGWWE 201 geslggGrrrRGlvPssaveel<-* g++ +Gr+ G++Ps++v+e+ KIAA0142 202 GTL--NGRT--GWFPSNYVREV 219 PF07653.7.ls: domain 1 of 1, from 166 to 219: score 72.8, E = 9.8e-19 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++ra +++ t+++e Ls+ kGdv++V+ + +gwwe KIAA0142 166 VVRAKFNFQQ-TNEDE------LSFSKGDVIHVT----RVEEGGWWE 201 geslggGrrrRGlvPssaveel<-* g++ +Gr+ G++Ps++v+e+ KIAA0142 202 GTL--NGRT--GWFPSNYVREV 219 PF00621.11.ls: domain 1 of 1, from 253 to 428: score 83.8, E = 4.8e-22 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl +leTE +Y ++L +++ +y++pL+ +++ L++ i+ + KIAA0142 253 VLQNILETENEYSKELQTVLSTYLRPLQTSEK-----LSSANISYLM 294 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+e+i +f++ + + sLe++ ++ + +qr+G +Fl l KIAA0142 295 GNLEEICSFQQMLVQ-SLEECTKLP-----------EAQQRVGGCFLNLM 332 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd + +Y Yc+n+p+A+++l+ ++ + ef + ++ass g KIAA0142 333 PQMKTLYLTYCANHPSAVNVLTE-----HSEELGEFMETKGASSP-G--- 373 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L + L+kP R+ +Yp LLkeL h + +++d +k+++a KIAA0142 374 ---ILVLTTGLSKPFMRLDKYPTLLKELERHMED--YHTDRQDIQKSMAA 418 lqdlaksiNe<-* ++l+ + e KIAA0142 419 FKNLSAQCQE 428 PF00621.11.fs: domain 1 of 1, from 253 to 428: score 82.1, E = 4.8e-24 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl +leTE +Y ++L +++ +y++pL+ +++ L++ i+ + KIAA0142 253 VLQNILETENEYSKELQTVLSTYLRPLQTSEK-----LSSANISYLM 294 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+e+i +f++ + + sLe++ ++ + +qr+G +Fl l KIAA0142 295 GNLEEICSFQQMLVQ-SLEECTKLP-----------EAQQRVGGCFLNLM 332 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd + +Y Yc+n+p+A+++l+ ++ + ef + ++ass g KIAA0142 333 PQMKTLYLTYCANHPSAVNVLTE-----HSEELGEFMETKGASSP-G--- 373 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L + L+kP R+ +Yp LLkeL h + +++d +k+++a KIAA0142 374 ---ILVLTTGLSKPFMRLDKYPTLLKELERHMED--YHTDRQDIQKSMAA 418 lqdlaksiNe<-* ++l+ + e KIAA0142 419 FKNLSAQCQE 428 PF00169.19.fs: domain 1 of 1, from 458 to 556: score 58.7, E = 2.1e-17 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk....kkpkgsi v+++ +l + g ++ +Ry+ Lf++vLl+ +++ +++ ++g++ KIAA0142 458 VTYMSQVLIQCaGSEEKNERYLLLFPNVLLMLSASPrmsgFIYQGKL 504 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa p g+++tk++d+++++n+Fei+ ++ e++l++++++++++eWv+++q++ KIAA0142 505 PTTGMTITKLEDSeNHRNAFEISGsMIERILVSCNNQQDLQEWVEHLQKQ 554 ir<-* + KIAA0142 555 TK 556 PF00169.19.ls: domain 1 of 1, from 458 to 556: score 60.7, E = 4.4e-15 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk....kkpkgsi v+++ +l + g ++ +Ry+ Lf++vLl+ +++ +++ ++g++ KIAA0142 458 VTYMSQVLIQCaGSEEKNERYLLLFPNVLLMLSASPrmsgFIYQGKL 504 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa p g+++tk++d+++++n+Fei+ ++ e++l++++++++++eWv+++q++ KIAA0142 505 PTTGMTITKLEDSeNHRNAFEISGsMIERILVSCNNQQDLQEWVEHLQKQ 554 ir<-* + KIAA0142 555 TK 556 //