hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18313776/chunk_1/iprscan-20080501-18313776.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0142 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 170.9 1.3e-46 1 SM00326 100.9 1.5e-25 1 SM00233 47.5 1.7e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00326 1/1 165 220 .. 1 58 [] 100.9 1.5e-25 SM00325 1/1 253 428 .. 1 211 [] 170.9 1.3e-46 SM00233 1/1 458 558 .. 1 82 [] 47.5 1.7e-09 Alignments of top-scoring domains: SM00326: domain 1 of 1, from 165 to 220: score 100.9, E = 1.5e-25 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG +v+A+++++ +nedELsF+kGD+i+v++ +++gWweG+ln G++G KIAA0142 165 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLN--GRTG 209 lfPsnYVeeie<-* +fPsnYV+e++ KIAA0142 210 WFPSNYVREVK 220 SM00325: domain 1 of 1, from 253 to 428: score 170.9, E = 1.3e-46 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl vl+ +l+TE +Y ++L++++ ++l+pL+ ++ ls + l KIAA0142 253 VLQNILETENEYSKELQTVLSTYLRPLQTSE------KLSSANISYL 293 FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv +g N+eei++f++ + ++Lee+ ++ + ++r+g + KIAA0142 294 MG-NLEEICSFQQMLVQSLEECTKLPE---------------AQQRVGGC 327 FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk Fl+l +++++ +Y +Yc+nhp+a+++l++ +++++ +f++ ++ KIAA0142 328 FLNL--MPQMKTLYLTYCANHPSAVNVLTE-----HSEELGEFMETKGAS 370 pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk ++ + l L++ L+kP+ Rl kYp LLkel++h+++ h dr+d++k KIAA0142 371 SPGI------LVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQK 414 AleaikelasqvNe<-* +a k+l +q++e KIAA0142 415 SMAAFKNLSAQCQE 428 SM00233: domain 1 of 1, from 458 to 558: score 47.5, E = 1.7e-09 *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk......kpkgsi v++ ++l++ +++ +ry+ Lf++vLl +++ ++ ++g++ KIAA0142 458 VTYMSQVLIQCagSeEKNERYLLLFPNVLLMLSASprmsgfIYQGKL 504 pLsgcsvre.p.......cFeivt.dr.tlllqAeseeereeWvealqsa p +g+++++ +++++++++Fei+ + +++l++++++++++eWve+lq+ KIAA0142 505 PTTGMTITKlEdsenhrnAFEISGsMIeRILVSCNNQQDLQEWVEHLQKQ 554 iaka<-* ++ KIAA0142 555 TKVT 558 //