hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18412959/chunk_1/iprscan-20080501-18412959.nocrc
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Query sequence: KIAA0148
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01412.9.ls Putative GTPase activating protein for Arf     199.4    7.7e-57   1
PF01412.9.fs Putative GTPase activating protein for Arf     197.5    1.6e-56   1
PF08518.2.ls Spa2 homology domain (SHD) of GIT              139.2      1e-38   2
PF08518.2.fs Spa2 homology domain (SHD) of GIT              135.2    1.6e-37   2
PF00023.20.fs Ankyrin repeat                                  31.9    6.4e-08   3
PF00023.20.ls Ankyrin repeat                                  31.8    2.2e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01412.9.fs   1/1      22   147 ..     1   137 []   197.5  1.6e-56
PF01412.9.ls   1/1      22   147 ..     1   137 []   199.4  7.7e-57
PF00023.20.fs   1/3     160   183 ..     6    29 ..     3.0      7.6
PF00023.20.ls   1/2     189   221 ..     1    33 []    27.8  3.5e-05
PF00023.20.fs   2/3     189   221 ..     1    33 []    25.8  3.2e-06
PF00023.20.fs   3/3     222   244 ..     1    23 [.     3.1      7.1
PF00023.20.ls   2/2     222   254 ..     1    33 []     4.0      7.8
PF08518.2.ls   1/2     291   321 ..     1    31 []    70.0  6.8e-18
PF08518.2.fs   1/2     291   321 ..     1    31 []    68.0  2.7e-17
PF08518.2.ls   2/2     355   385 ..     1    31 []    69.2  1.2e-17
PF08518.2.fs   2/2     355   385 ..     1    31 []    67.2    5e-17

Alignments of top-scoring domains:
PF01412.9.fs: domain 1 of 1, from 22 to 147: score 197.5, E = 1.6e-56
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                       +++++Lrs++    +C+DC   p+P WaSvn G+flC eC+++HR+
    KIAA0148    22    GAMSKRLRSSE----VCADCSG-PDPSWASVNRGTFLCDECCSVHRS 63   

                   LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl
                   L G+HiS+V  R+l+++ W+p+ l+++e   ++N++ans+wE+ l d+++
    KIAA0148    64 L-GRHISQV--RHLKHTPWPPTLLQMVE--TLYNNGANSIWEHSLLDPAS 108  

                   kpkdsdaaa.v.KCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   ++++++ a++++K    + ++ +fi+aKY++++fv+++++++   
    KIAA0148   109 IMSGRRKANpQdK---VHPNKAEFIRAKYQMLAFVHRLPCRD    147  

PF01412.9.ls: domain 1 of 1, from 22 to 147: score 199.4, E = 7.7e-57
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                       +++++Lrs++    +C+DC   p+P WaSvn G+flC eC+++HR+
    KIAA0148    22    GAMSKRLRSSE----VCADCSG-PDPSWASVNRGTFLCDECCSVHRS 63   

                   LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl
                   L G+HiS+V  R+l+++ W+p+ l+++e   ++N++ans+wE+ l d+++
    KIAA0148    64 L-GRHISQV--RHLKHTPWPPTLLQMVE--TLYNNGANSIWEHSLLDPAS 108  

                   kpkdsdaaa.v.KCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   ++++++ a++++K    + ++ +fi+aKY++++fv+++++++   
    KIAA0148   109 IMSGRRKANpQdK---VHPNKAEFIRAKYQMLAFVHRLPCRD    147  

PF00023.20.fs: domain 1 of 3, from 160 to 183: score 3.0, E = 7.6
                   *->LHlAalrgnlevvklLlsqGAdln<-*
                      LH  ++ gnle +  Lls GA  n   
    KIAA0148   160    LHSSVRTGNLETCLRLLSLGAQAN    183  

PF00023.20.ls: domain 1 of 2, from 189 to 221: score 27.8, E = 3.5e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPLH+A++ g++  ++lL  +GAd+  qd    
    KIAA0148   189    KGNTPLHVASKAGQILQAELLAVYGADPGTQDS    221  

PF00023.20.fs: domain 2 of 3, from 189 to 221: score 25.8, E = 3.2e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPLH+A++ g++  ++lL  +GAd+  qd    
    KIAA0148   189    KGNTPLHVASKAGQILQAELLAVYGADPGTQDS    221  

PF00023.20.fs: domain 3 of 3, from 222 to 244: score 3.1, E = 7.1
                   *->dGfTPLHlAalrgnlevvklLls<-*
                       G TP  +A + g++e+++ L++   
    KIAA0148   222    SGKTPVDYARQGGHHELAERLVE    244  

PF00023.20.ls: domain 2 of 2, from 222 to 254: score 4.0, E = 7.8
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TP  +A + g++e+++ L++   +l  +     
    KIAA0148   222    SGKTPVDYARQGGHHELAERLVEIQYELTDRLA    254  

PF08518.2.ls: domain 1 of 2, from 291 to 321: score 70.0, E = 6.8e-18
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      akkKL++ls+++FeeL++Dv+devdRRe+da   
    KIAA0148   291    AKKKLQSLSNHLFEELAMDVYDEVDRRETDA    321  

PF08518.2.fs: domain 1 of 2, from 291 to 321: score 68.0, E = 2.7e-17
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      akkKL++ls+++FeeL++Dv+devdRRe+da   
    KIAA0148   291    AKKKLQSLSNHLFEELAMDVYDEVDRRETDA    321  

PF08518.2.ls: domain 2 of 2, from 355 to 385: score 69.2, E = 1.2e-17
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      +++KLar++a+eF++LviD+l++++RR+q++   
    KIAA0148   355    GRQKLARFNAHEFATLVIDILSDAKRRQQGS    385  

PF08518.2.fs: domain 2 of 2, from 355 to 385: score 67.2, E = 5e-17
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      +++KLar++a+eF++LviD+l++++RR+q++   
    KIAA0148   355    GRQKLARFNAHEFATLVIDILSDAKRRQQGS    385  

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