HUGE

Gene/Protein Characteristic Table for KIAA0152

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00431
Accession No. :	D63486
Description :
HUGO Gene Name :
Clone Name :	ha03561 [Vector Info]
Flexi ORF Clone :	pF1KSDA0152
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 6322 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 5315 bp

Genome contig ID gi89161190f_119509355
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
ATTGCTTTGTGTTTTAATAAACAATTTGCAGTGAC
Flanking genome sequence
(114691 - 114740)
----+----*----+----*----+----*----+----*----+----*
ACTCTGTGTTGGGACTGAGTTCGAACTTGATCTCAAAGCGCTGAAGTGAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 f 119609355 119624044 5 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 315 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q6ZQI3	1.1e-102	93.5	Malectin; Flags...	Mus musculus
BAC27434	3.9e-102	93.2	unnamed protein...	Mus musculus
AAI46165	3.2e-97	94.5	LOC515309 prote...	Bos taurus
ACH43740	1.3e-88	86.0	putative RIKEN ...	Taeniopygia guttata
Q8AVF4	7e-88	87.0	Malectin-B; Fla...	Xenopus laevis

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 20 VVAAMLGAWAVEGTAVALLRLLL 42 PRIMARY 23

2 55 GVAGVAGAAGAGLPESVIWAVNA 77 SECONDARY 23

3 291 NSSLMFPILVAFGVFIPTLFCLC 313 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	20	VVAAMLGAWAVEGTAVALLRLLL	42	PRIMARY	23
2	55	GVAGVAGAAGAGLPESVIWAVNA	77	SECONDARY	23
3	291	NSSLMFPILVAFGVFIPTLFCLC	313	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: GATAAGAGCAGGTGATTTGGG
Primer_r	: GCACTACTGTTTCCTTGGCTG
PCR product length	: 133 bp
PCR conditions	: 95 °C15 sec68 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	5315 bp
Genome contig ID	gi89161190f_119509355
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- ATTGCTTTGTGTTTTAATAAACAATTTGCAGTGAC
Flanking genome sequence (114691 - 114740)	----+--------+--------+--------+--------+----* ACTCTGTGTTGGGACTGAGTTCGAACTTGATCTCAAAGCGCTGAAGTGAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	f	119609355	119624044	5	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0152

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information