hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19313222/chunk_1/iprscan-20080501-19313222.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0178 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02463.9.ls RecF/RecN/SMC N terminal domain 427.9 1.2e-125 1 PF02463.9.fs RecF/RecN/SMC N terminal domain 426.1 4.6e-125 1 PF06470.4.fs SMC proteins Flexible Hinge Domain 128.2 4.1e-38 1 PF06470.4.ls SMC proteins Flexible Hinge Domain 130.2 5.4e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02463.9.ls 1/1 3 1212 .. 1 243 [] 427.9 1.2e-125 PF02463.9.fs 1/1 3 1212 .. 1 243 [] 426.1 4.6e-125 PF02524.5.ls 5/6 469 479 .. 1 11 [] 7.2 14 PF06470.4.ls 1/1 511 629 .. 1 124 [] 130.2 5.4e-36 PF06470.4.fs 1/1 511 629 .. 1 124 [] 128.2 4.1e-38 Alignments of top-scoring domains: PF02463.9.ls: domain 1 of 1, from 3 to 1212: score 427.9, E = 1.2e-125 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV +lk ie+e+FKSY+g++iigpF++ FtaI+GPNGSGKSN++DAI+FV KIAA0178 3 FLKLIEIENFKSYKGRQIIGPFQR-FTAIIGPNGSGKSNLMDAISFV 48 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkkh LGe+++ +LR++ l dLIh+++ +++++n+A V++++ ++e+++ KIAA0178 49 LGEKTS-NLRVKTLRDLIHGAPVGKPAANRAFVSMVY------SEEGAE- 90 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLesa ++ rv+++G+ SeY+IN+k+v++ +++se+Le++ KIAA0178 91 -------------DRTFARVIVGGS--SEYKINNKVVQL-HEYSEELEKL 124 RF xxxxx GIske............................................. GI+++ ++ + + + ++ +++ + ++ + ++ ++ ++++++ KIAA0178 125 GILIKarnflvfqgavesiamknpkertalfeeisrsgelaqeydkrkke 174 RF .................................................. + +++ + + ++++ ++++ ++++++ ++ ++++++ + + +++ KIAA0178 175 mvkaeedtqfnyhrkkniaaerkeakqekeeadryqrlkdevvraqvqlq 224 RF .................................................. + ++ ++ + +++++++ ++++ ++++++ ++ +++++++++++ + KIAA0178 225 lfklyhneveieklnkelasknkeiekdkkrmdkvedelkekkkelgkmm 274 RF .................................................. +++++ +++ ++++ ++++++ + + +++ + ++++ ++ +++ ++ KIAA0178 275 reqqqiekeikekdselnqkrpqyikakentshkikkleaakkslqnaqk 324 RF .................................................. ++++ + ++++++ + ++ +++ +++ +++ + + +++ +++++ ++ KIAA0178 325 hykkrkgdmdelekemlsvekarqefeermeeesqsqgrdltleenqvkk 374 RF .................................................. +++++ ++ + +++++ +++++ ++++++++++++ + + + +++ KIAA0178 375 yhrlkeeaskraatlaqelekfnrdqkadqdrldleerkkveteakikqk 424 RF .................................................. +++ ++++++ +++++ ++ ++++++++ ++ ++ + +++ ++ + KIAA0178 425 lreieenqkriekleeyittskqsleeqkklegelteevemakrridein 474 RF .................................................. +++++ +++ + + ++++ +++++ + + +++ ++ ++ + KIAA0178 475 kelnqvmeqlgdaridrqessrqqrkaeimesikrlypgsvygrlidlcq 524 RF .................................................. +++ + + + ++ + + ++ ++ + ++++ + + + ++ KIAA0178 525 ptqkkyqiavtkvlgknmdaiivdsektgrdciqyikeqrgepetflpld 574 RF .................................................. ++ + ++++++++ ++ + + + ++ ++ + + ++ ++ KIAA0178 575 ylevkptdeklrelkgaklvidviryepphikkalqyacgnalvcdnved 624 RF .................................................. ++ ++ + ++ + ++ +++ + ++ +++ +++ KIAA0178 625 arriafgghqrhktvaldgtlfqksgvisggasdlkakarrwdekavdkl 674 RF .................................................. +++++++ ++++++ + ++++ ++++ + + ++ +++ + ++++ + KIAA0178 675 kekkerlteelkeqmkakrkeaelrqvqsqahglqmrlkysqsdleqtkt 724 RF .................................................. + + ++++++ +++ ++ + + ++ ++ + ++++ ++++++ ++ ++ KIAA0178 725 rhlalnlqekskleselanfgprindikriiqsreremkdlkekmnqved 774 RF .................................................. + ++ ++ ++ ++ ++++ +++++ +++++ ++++ ++ +++ + KIAA0178 775 evfeefcreigvrnirefeeekvkrqneiakkrlefenqktrlgiqldfe 824 RF .................................................. ++++++++++ ++ ++++++ +++++++++ + ++ ++++++ KIAA0178 825 knqlkedqdkvhmweqtvkkdeneieklkkeeqrhmkiidetmaqlqdlk 874 RF .................................................. ++ + ++ + ++++ + ++ ++++ +++ ++++ + ++++++ KIAA0178 875 nqhlakksevndknhemeeirkklggankemthlqkevtaietkleqkrs 924 RF .................................................. ++ ++++ + ++ ++ + + ++ +++ + ++ ++ KIAA0178 925 drhnllqackmqdiklplskgtmddisqeegssqgedsvsgsqrissiya 974 RF .................................................. ++ + + + ++ +++++ + +++ +++ + +++++++++ +++ + KIAA0178 975 realieidygdlcedlkdaqaeeeikqemntlqqklneqqsvlqriaapn 1024 RF .................................................. + ++++ +++ ++ ++ + +++ ++ ++ ++ ++++ ++ + KIAA0178 1025 mkameklesvrdkfqetsdefeaarkrakkakqafeqikkerfdrfnacf 1074 RF .................................................. + + ++ + + ++ + + ++ ++ ++ + + ++ + KIAA0178 1075 esvatnideiykalsrnssaqaflgpenpeepyldginyncvapgkrfrp 1124 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ..nLSGGEKtLaALALlFAQGEyliqkykPaPFYvlDEiDAALDeaNvsr +nLSGGEKt+aALALlFA i++ykPaPF+vlDEiDAALD++N+++ KIAA0178 1125 mdNLSGGEKTVAALALLFA-----IHSYKPAPFFVLDEIDAALDNTNIGK 1169 RF xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vAnyiktelskn.aQFIVIslReemfekAdrlvGvymvengvst<-* vAnyik e+s++++Q IVIsl+ee++ kA++l+Gvy++++ + KIAA0178 1170 VANYIK-EQSTCnFQAIVISLKEEFYTKAESLIGVYPEQGDCVI 1212 PF02463.9.fs: domain 1 of 1, from 3 to 1212: score 426.1, E = 4.6e-125 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV +lk ie+e+FKSY+g++iigpF++ FtaI+GPNGSGKSN++DAI+FV KIAA0178 3 FLKLIEIENFKSYKGRQIIGPFQR-FTAIIGPNGSGKSNLMDAISFV 48 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkkh LGe+++ +LR++ l dLIh+++ +++++n+A V++++ ++e+++ KIAA0178 49 LGEKTS-NLRVKTLRDLIHGAPVGKPAANRAFVSMVY------SEEGAE- 90 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLesa ++ rv+++G+ SeY+IN+k+v++ +++se+Le++ KIAA0178 91 -------------DRTFARVIVGGS--SEYKINNKVVQL-HEYSEELEKL 124 RF xxxxx GIske............................................. GI+++ ++ + + + ++ +++ + ++ + ++ ++ ++++++ KIAA0178 125 GILIKarnflvfqgavesiamknpkertalfeeisrsgelaqeydkrkke 174 RF .................................................. + +++ + + ++++ ++++ ++++++ ++ ++++++ + + +++ KIAA0178 175 mvkaeedtqfnyhrkkniaaerkeakqekeeadryqrlkdevvraqvqlq 224 RF .................................................. + ++ ++ + +++++++ ++++ ++++++ ++ +++++++++++ + KIAA0178 225 lfklyhneveieklnkelasknkeiekdkkrmdkvedelkekkkelgkmm 274 RF .................................................. +++++ +++ ++++ ++++++ + + +++ + ++++ ++ +++ ++ KIAA0178 275 reqqqiekeikekdselnqkrpqyikakentshkikkleaakkslqnaqk 324 RF .................................................. ++++ + ++++++ + ++ +++ +++ +++ + + +++ +++++ ++ KIAA0178 325 hykkrkgdmdelekemlsvekarqefeermeeesqsqgrdltleenqvkk 374 RF .................................................. +++++ ++ + +++++ +++++ ++++++++++++ + + + +++ KIAA0178 375 yhrlkeeaskraatlaqelekfnrdqkadqdrldleerkkveteakikqk 424 RF .................................................. +++ ++++++ +++++ ++ ++++++++ ++ ++ + +++ ++ + KIAA0178 425 lreieenqkriekleeyittskqsleeqkklegelteevemakrridein 474 RF .................................................. +++++ +++ + + ++++ +++++ + + +++ ++ ++ + KIAA0178 475 kelnqvmeqlgdaridrqessrqqrkaeimesikrlypgsvygrlidlcq 524 RF .................................................. +++ + + + ++ + + ++ ++ + ++++ + + + ++ KIAA0178 525 ptqkkyqiavtkvlgknmdaiivdsektgrdciqyikeqrgepetflpld 574 RF .................................................. ++ + ++++++++ ++ + + + ++ ++ + + ++ ++ KIAA0178 575 ylevkptdeklrelkgaklvidviryepphikkalqyacgnalvcdnved 624 RF .................................................. ++ ++ + ++ + ++ +++ + ++ +++ +++ KIAA0178 625 arriafgghqrhktvaldgtlfqksgvisggasdlkakarrwdekavdkl 674 RF .................................................. +++++++ ++++++ + ++++ ++++ + + ++ +++ + ++++ + KIAA0178 675 kekkerlteelkeqmkakrkeaelrqvqsqahglqmrlkysqsdleqtkt 724 RF .................................................. + + ++++++ +++ ++ + + ++ ++ + ++++ ++++++ ++ ++ KIAA0178 725 rhlalnlqekskleselanfgprindikriiqsreremkdlkekmnqved 774 RF .................................................. + ++ ++ ++ ++ ++++ +++++ +++++ ++++ ++ +++ + KIAA0178 775 evfeefcreigvrnirefeeekvkrqneiakkrlefenqktrlgiqldfe 824 RF .................................................. ++++++++++ ++ ++++++ +++++++++ + ++ ++++++ KIAA0178 825 knqlkedqdkvhmweqtvkkdeneieklkkeeqrhmkiidetmaqlqdlk 874 RF .................................................. ++ + ++ + ++++ + ++ ++++ +++ ++++ + ++++++ KIAA0178 875 nqhlakksevndknhemeeirkklggankemthlqkevtaietkleqkrs 924 RF .................................................. ++ ++++ + ++ ++ + + ++ +++ + ++ ++ KIAA0178 925 drhnllqackmqdiklplskgtmddisqeegssqgedsvsgsqrissiya 974 RF .................................................. ++ + + + ++ +++++ + +++ +++ + +++++++++ +++ + KIAA0178 975 realieidygdlcedlkdaqaeeeikqemntlqqklneqqsvlqriaapn 1024 RF .................................................. + ++++ +++ ++ ++ + +++ ++ ++ ++ ++++ ++ + KIAA0178 1025 mkameklesvrdkfqetsdefeaarkrakkakqafeqikkerfdrfnacf 1074 RF .................................................. + + ++ + + ++ + + ++ ++ ++ + + ++ + KIAA0178 1075 esvatnideiykalsrnssaqaflgpenpeepyldginyncvapgkrfrp 1124 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ..nLSGGEKtLaALALlFAQGEyliqkykPaPFYvlDEiDAALDeaNvsr +nLSGGEKt+aALALlFA i++ykPaPF+vlDEiDAALD++N+++ KIAA0178 1125 mdNLSGGEKTVAALALLFA-----IHSYKPAPFFVLDEIDAALDNTNIGK 1169 RF xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vAnyiktelskn.aQFIVIslReemfekAdrlvGvymvengvst<-* vAnyik e+s++++Q IVIsl+ee++ kA++l+Gvy++++ + KIAA0178 1170 VANYIK-EQSTCnFQAIVISLKEEFYTKAESLIGVYPEQGDCVI 1212 PF02524.5.ls: domain 5 of 6, from 469 to 479: score 7.2, E = 14 *->KIdsVekeLkk<-* +Id ++keL++ KIAA0178 469 RIDEINKELNQ 479 PF06470.4.ls: domain 1 of 1, from 511 to 629: score 130.2, E = 5.4e-36 *->asgv.lGrvadlisVkekgyekAleaaLGadLdavvVdnaeaakkal +g+ +Gr++dl+++ +k+y+ A++ +LG+ +da++Vd++++ + ++ KIAA0178 511 YPGSvYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCI 557 eelkkarlGRaTflPLdkikpnpvatlealpegatplaglvrlpadlidy ++ k++r+ + TflPLd++ ++p ++ + ++++ + +l +d+i+y KIAA0178 558 QYIKEQRGEPETFLPLDYLEVKP----TDEK---LRELKGAKLVIDVIRY 600 d.pelrkalrrlLgqtlvVedldeArrla<-* ++p+++kal++++g+ lv++++++Arr+a KIAA0178 601 EpPHIKKALQYACGNALVCDNVEDARRIA 629 PF06470.4.fs: domain 1 of 1, from 511 to 629: score 128.2, E = 4.1e-38 *->asgv.lGrvadlisVkekgyekAleaaLGadLdavvVdnaeaakkal +g+ +Gr++dl+++ +k+y+ A++ +LG+ +da++Vd++++ + ++ KIAA0178 511 YPGSvYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCI 557 eelkkarlGRaTflPLdkikpnpvatlealpegatplaglvrlpadlidy ++ k++r+ + TflPLd++ ++p ++ + ++++ + +l +d+i+y KIAA0178 558 QYIKEQRGEPETFLPLDYLEVKP----TDEK---LRELKGAKLVIDVIRY 600 d.pelrkalrrlLgqtlvVedldeArrla<-* ++p+++kal++++g+ lv++++++Arr+a KIAA0178 601 EpPHIKKALQYACGNALVCDNVEDARRIA 629 //