# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02329s1.fasta.huge -Q ../query/KIAA0182.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0182, 1157 aa
 vs ./tmplib.23147 library

1986348 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 12.8225+/-0.00703; mu= -20.1467+/- 0.466
 mean_var=457.4408+/-111.688, 0's: 0 Z-trim: 7  B-trim: 134 in 1/39
 Lambda= 0.059966

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0853  ( 967 res)   hk06136                     ( 967)  308 41.7 0.00064


>>KIAA0853  ( 967 res)   hk06136                          (967 aa)
 initn: 730 init1: 267 opt: 308  Z-score: 162.2  bits: 41.7 E(): 0.00064
Smith-Waterman score: 319;  22.734% identity (47.854% similar) in 629 aa overlap (270-869:3-593)

     240       250       260       270       280       290         
KIAA01 HLSGVRYPPELSHSSLAALHSERMSGLSAERLQMDEELRREREREREREREREADREREK
                                     : ....:  ::::::::.::.:: ::.:..
KIAA08                             KARRELERERAREREREREKERDRERDRDRDH
                                           10        20        30  

     300       310       320        330        340       350       
KIAA01 EREREREKEREQEKEREREKE-RERELERQRE-QRAREKELLAAKALEPSFLPVAELHGL
       .::::::.::..:::::::.: :::: ::.:: .: ::.:   :.  .       . .  
KIAA08 DRERERERERDREKEREREREERERERERERERERERERERERARERDKERERQRDWED-
             40        50        60        70        80        90  

       360       370       380       390         400       410     
KIAA01 RGHATEERGKPSEQLTPTRAEKLKDASLQAPKPVQHPLHPVP--TPHHTVPSLISNHGIF
       . .. ..: .  :..   :  .      .. :  ..   : :  .:..      .. .  
KIAA08 KDKGRDDRREKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRREHSPDSDAYN
             100       110       120       130       140       150 

         420       430             440       450       460         
KIAA01 SLPSSSAATALLIQRTNEEEKW------LARQRRLRQEKEDRQSQVSEFRQQVLEQHLDM
       :  ...    :: : .  .:.       :...:. : ..:::. . .:  ..  ::.:  
KIAA08 SGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWKEEDRKPERKESSRRYEEQELKE
             160       170       180       190       200       210 

     470       480         490             500       510       520 
KIAA01 GRPPVPAEAEHRP--ESTTRPGPN---RHEPGGR---DPPQHFGGPPPLISPKPQLHAAP
           :  . :.    ::.   . .   .:.   :   :  .  .     :. ::  .   
KIAA08 KVSSVDKQREQTEILESSRMRAQDIIGHHQSEDRETSDRAHDENKKKAKIQKKPIKKKKE
             220       230       240       250       260       270 

             530       540       550       560       570       580 
KIAA01 TALWNPVSLMDNTLETRRAESHSLHSHPAAFEPSRQAAVPLVKVERVFCPEKAEEGPRKR
         .    . ...: :  .. : .  ..  ..: .:. .     .      : :... .::
KIAA08 DDVGIERGNIETTSEDGQVFSPKKGQKKKSIEKKRKKSKGDSDISD---EEAAQQSKKKR
             280       290       300       310          320        

             590       600       610       620              630    
KIAA01 EPAPLDKYQPPPPPPREGGSLEHQPFLPGPGPFLAELEKSTQTILGQ-------QRASLP
        :      . ::   .:    :   .  : . .: . .:. .: ...       .:. . 
KIAA08 GP------RTPPITTKE----ELVEMCNGKNGILEDSQKKEDTAFSDWSDEDVPDRTEVT
      330                 340       350       360       370        

          640       650           660       670       680       690
KIAA01 QAATFGELSGPLKPGSPYR----PPVPRAPDPAYIYDEFLQQRRRLVSKLDLEERRRREA
       .:   .  . : .  ::      :: : :   :      :      ..  ..       .
KIAA08 EAEHTATATTPGSTPSPLSSLLPPPPPVATATATTVPATLAATTA-AAATSFSTSAITIS
      380       390       400       410       420        430       

              700       710       720       730       740       750
KIAA01 QEKGYYYDLDDSYDESDEEEVRAHLRCVAEQPPLKLDTSSEKLEFLQLFGLTTQQQKEEL
                .... . :     .: .:   .   :..:    .:  :      :...  :
KIAA08 TSATPTNTTNNTFANED-----SHRKCHRTRVE-KVETPHVTIEDAQHRKPMDQKRSSSL
       440       450            460        470       480       490 

              760       770       780       790       800       810
KIAA01 VAQKRRKRRRMLRERSPSPPTIQSKRQTPSPRLALSTRYSPDEMNNSPNFEEKKKFLTIF
        ...  . .   : ::::  . . . .  : :  .    : :.        :: : :   
KIAA08 GSNRSNRSHTSGRLRSPSNDSAHRSGDDQSGRKRVLHSGSRDR--------EKTKSL---
             500       510       520       530               540   

              820       830       840       850       860       870
KIAA01 NLTHISAEKRKDKERLVEMLRAMKQKALSAAVADSLTNSPRDSPAVSLSEPATQQASLDV
          .:..:.   : :. .. :.  ... :.   :: ..: : :   :  .  ....:.: 
KIAA08 ---EITGER---KSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDS
                    550       560       570       580       590    

              880       890       900       910       920       930
KIAA01 EKPVGVAASLSDIPKAAEPGKLEQVRPQELSRVQELAPASGEKARLSEAPGGKKSLSMLH
                                                                   
KIAA08 RDRLQERDRYEHDRERERERRDTRQREWDRDADKDWPRNRDRDRLRERERERERDKRRDL
          600       610       620       630       640       650    




1157 residues in 1 query   sequences
1986348 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:40 2008 done: Thu Dec 18 15:10:41 2008
 Total Scan time:  0.750 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]