hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19412378/chunk_1/iprscan-20080501-19412378.nocrc
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Query sequence: KIAA0184
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00501.18.fs AMP-binding enzyme                          167.3    3.5e-47   2
PF00501.18.ls AMP-binding enzyme                          159.4    8.8e-45   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00501.18.fs   2/2     310   782 ..     1   377 []   157.4  3.5e-44
PF00501.18.ls   1/1     310   782 ..     1   377 []   159.4  8.8e-45

Alignments of top-scoring domains:
PF00501.18.fs: domain 2 of 2, from 310 to 782: score 157.4, E = 3.5e-44
                   *->TYrELderanrlAaaLr.alGvgpGdrVaillpnspelvvailAvlk
                      T  +L+ ra+r+AaaL ++  +  Gd+Va+  p +++l++a++++l 
    KIAA0184   310    TCVQLHKRAERVAAALMeKGRLSVGDHVALVYPPGVDLIAAFYGCLY 356  

                   aGaayvPldpsypa......erlayiledsgakvlltddalla.l.....
                    G+++v++ p +p++ +++   +  i+e s+++++lt+ a  + l ++++
    KIAA0184   357 CGCVPVTVRPPHPQnlgttlPTVKMIVEVSKSACVLTTQAVTRlLrskea 406  

                   .....................s.e.p.ppvdpddlAyiiYTSGTTGkPKG
                   +++++  + ++  ++++ +++  ++  +p++pd lAy+ ++  TTG   G
    KIAA0184   407 aaavdirtwptildtddipkkKiAsVfRPPSPDVLAYLDFSVSTTGILAG 456  

                   VmltHrnlvnlvaala.rf.l.pddaervllllppllhfdgsvweifgpL
                   V ++H++  +l++++  +++l p    r ++   ++++  g+ ++ ++++
    KIAA0184   457 VKMSHAATSALCRSIKlQCeLyPS---RQIAICLDPYCGLGFALWCLCSV 503  

                   laGatlvlvpkfdryrdpealldliekykvTvlflvPtllrlllkape..
                   ++G++ vlvp+ ++  +++++l ++ +yk+ v+f+  ++++++ k    +
    KIAA0184   504 YSGHQSVLVPPLELESNVSLWLSAVSQYKARVTFCSYSVMEMCTKGLGaq 553  

                   ........edlssLrlvlsgGealpp.elarrlrerfgs...........
                   ++  + ++ +ls +r++++++e  p+ +l + + ++f++ + + +  +++
    KIAA0184   554 tgvlrmkgVNLSCVRTCMVVAEERPRiALTQSFSKLFKDlglparavstt 603  

                   ......ggvrlvngYGpTEttvvatanppg.p..............pgsi
                    + + ++ + l  + Gp  ttv + +  + +++ +  +++++++ +    
    KIAA0184   604 fgcrvnVAICLQGTAGPDPTTVYVDMRALRhDrvrlvergsphslpLMES 653  

                   GrPlpgvevyvlDeeg.qpvppGevGELyirGwpgvarGYlnrPelTaer
                   G+ lpgv+v +   e++ p+++   GE+++++ p+ a GY+   +  +e+
    KIAA0184   654 GKILPGVKVIIAHTETkGPLGDSHLGEIWVSS-PHNATGYYTVYG--EEA 700  

                   Fvadgwgp.......GeRmYrTGDlgrwdpD..........GyleilGRk
                     ad + ++ + +++++ + rTG lg ++  + ++ +++++  l+++G +
    KIAA0184   701 LHADHFSArlsfgdtQTIWARTGYLGFLRRTeltdasggrhDALYVVGSL 750  

                   DdqvKirGerIepgEiEavLl.ahPgVaeAaV<-*
                   D+   +rG r  p +iE+ + +ah  +ae+aV   
    KIAA0184   751 DETLELRGMRYHPIDIETSVIrAHRSIAECAV    782  

PF00501.18.ls: domain 1 of 1, from 310 to 782: score 159.4, E = 8.8e-45
                   *->TYrELderanrlAaaLr.alGvgpGdrVaillpnspelvvailAvlk
                      T  +L+ ra+r+AaaL ++  +  Gd+Va+  p +++l++a++++l 
    KIAA0184   310    TCVQLHKRAERVAAALMeKGRLSVGDHVALVYPPGVDLIAAFYGCLY 356  

                   aGaayvPldpsypa......erlayiledsgakvlltddalla.l.....
                    G+++v++ p +p++ +++   +  i+e s+++++lt+ a  + l ++++
    KIAA0184   357 CGCVPVTVRPPHPQnlgttlPTVKMIVEVSKSACVLTTQAVTRlLrskea 406  

                   .....................s.e.p.ppvdpddlAyiiYTSGTTGkPKG
                   +++++  + ++  ++++ +++  ++  +p++pd lAy+ ++  TTG   G
    KIAA0184   407 aaavdirtwptildtddipkkKiAsVfRPPSPDVLAYLDFSVSTTGILAG 456  

                   VmltHrnlvnlvaala.rf.l.pddaervllllppllhfdgsvweifgpL
                   V ++H++  +l++++  +++l p    r ++   ++++  g+ ++ ++++
    KIAA0184   457 VKMSHAATSALCRSIKlQCeLyPS---RQIAICLDPYCGLGFALWCLCSV 503  

                   laGatlvlvpkfdryrdpealldliekykvTvlflvPtllrlllkape..
                   ++G++ vlvp+ ++  +++++l ++ +yk+ v+f+  ++++++ k    +
    KIAA0184   504 YSGHQSVLVPPLELESNVSLWLSAVSQYKARVTFCSYSVMEMCTKGLGaq 553  

                   ........edlssLrlvlsgGealpp.elarrlrerfgs...........
                   ++  + ++ +ls +r++++++e  p+ +l + + ++f++ + + +  +++
    KIAA0184   554 tgvlrmkgVNLSCVRTCMVVAEERPRiALTQSFSKLFKDlglparavstt 603  

                   ......ggvrlvngYGpTEttvvatanppg.p..............pgsi
                    + + ++ + l  + Gp  ttv + +  + +++ +  +++++++ +    
    KIAA0184   604 fgcrvnVAICLQGTAGPDPTTVYVDMRALRhDrvrlvergsphslpLMES 653  

                   GrPlpgvevyvlDeeg.qpvppGevGELyirGwpgvarGYlnrPelTaer
                   G+ lpgv+v +   e++ p+++   GE+++++ p+ a GY+   +  +e+
    KIAA0184   654 GKILPGVKVIIAHTETkGPLGDSHLGEIWVSS-PHNATGYYTVYG--EEA 700  

                   Fvadgwgp.......GeRmYrTGDlgrwdpD..........GyleilGRk
                     ad + ++ + +++++ + rTG lg ++  + ++ +++++  l+++G +
    KIAA0184   701 LHADHFSArlsfgdtQTIWARTGYLGFLRRTeltdasggrhDALYVVGSL 750  

                   DdqvKirGerIepgEiEavLl.ahPgVaeAaV<-*
                   D+   +rG r  p +iE+ + +ah  +ae+aV   
    KIAA0184   751 DETLELRGMRYHPIDIETSVIrAHRSIAECAV    782  

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