hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19493217/chunk_1/iprscan-20080501-19493217.nocrc
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Query sequence: KIAA0189
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01852.10.fs START domain                                   247.0    2.9e-77   1
PF01852.10.ls START domain                                   248.9      1e-71   1
PF00620.17.fs RhoGAP domain                                  168.1    2.7e-49   1
PF00620.17.ls RhoGAP domain                                  170.0    5.6e-48   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00620.17.fs   1/1     695   844 ..     1   155 []   168.1  2.7e-49
PF00620.17.ls   1/1     695   844 ..     1   155 []   170.0  5.6e-48
PF01852.10.fs   1/1     927  1129 ..     1   244 []   247.0  2.9e-77
PF01852.10.ls   1/1     927  1129 ..     1   244 []   248.9    1e-71

Alignments of top-scoring domains:
PF00620.17.fs: domain 1 of 1, from 695 to 844: score 168.1, E = 2.7e-49
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ +++  ++l++ +Ld++GI+R+sG ksri+ Lr+   ++  +d +
    KIAA0189   695    PQSIQQAMRYLRSQCLDQVGIFRKSGVKSRIQNLRQ--MNETSPDNV 739  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   + e ++ ++vA+lLK+++R+LPeP++t +l  +f+  ++++ ++++ l a
    KIAA0189   740 CYEGQSAYDVADLLKQYFRDLPEPIFTSKLTTTFLQ-IYQLLPKDQWLAA 788  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                    +++  +LP++Nr++L+ Ll++L+ +a+ +e N+Mta NLA++ +P++++
    KIAA0189   789 AQAATLLLPDENREVLQTLLYFLSDIASAEE-NQMTAGNLAVCLAPSIFH 837  

                   ppdgdsad<-*
                     ++ ++d   
    KIAA0189   838 LNVS-KKD    844  

PF00620.17.ls: domain 1 of 1, from 695 to 844: score 170.0, E = 5.6e-48
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ +++  ++l++ +Ld++GI+R+sG ksri+ Lr+   ++  +d +
    KIAA0189   695    PQSIQQAMRYLRSQCLDQVGIFRKSGVKSRIQNLRQ--MNETSPDNV 739  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   + e ++ ++vA+lLK+++R+LPeP++t +l  +f+  ++++ ++++ l a
    KIAA0189   740 CYEGQSAYDVADLLKQYFRDLPEPIFTSKLTTTFLQ-IYQLLPKDQWLAA 788  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                    +++  +LP++Nr++L+ Ll++L+ +a+ +e N+Mta NLA++ +P++++
    KIAA0189   789 AQAATLLLPDENREVLQTLLYFLSDIASAEE-NQMTAGNLAVCLAPSIFH 837  

                   ppdgdsad<-*
                     ++ ++d   
    KIAA0189   838 LNVS-KKD    844  

PF01852.10.fs: domain 1 of 1, from 927 to 1129: score 247.0, E = 2.9e-77
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      +++ee++q+l+++a+++++gW++++   ++++++  +++ +      
    KIAA0189   927    LYMEENIQDLLRDAAERFKGWMSVP---GPQHTELACRKAP------ 964  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmey.raqWdkdvrciVs
                          +g+++R++++ ++v+a   ++ +l++ +++ra+Wd+d+     
    KIAA0189   965 -------DGHPLRLWKASTEVAA--PPAVVLHRVLReRALWDEDLL---- 1001 

                   kaetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDd
                   +a++le++++g       +l++yv++++a  p+++ RDfv++R+wr d  
    KIAA0189  1002 RAQVLEALMPG------VELYHYVTDSMA--PHPC-RDFVVLRMWRSD-- 1040 

                   HRFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngp
                      l++g++++v++S+d++q++pe     + vRa +l+S+yl+epcg g+
    KIAA0189  1041 ---LPRGGCLLVSQSLDPEQPVPE-----SGVRALMLTSQYLMEPCGLGR 1082 

                   ekskvtwvehvDlkgwlPvhwllrslvksgmafgakt..wvatlqrlcek
                     s++t+++++Dl+g++P +w+++++++ +++++ak+++ + tlq  + +
    KIAA0189  1083 --SRLTHICRADLRGRSP-DWYNKVFGHLCAMEVAKIrdSFPTLQAAGPE 1129 

                   <-*
                      
    KIAA0189     -     -    

PF01852.10.ls: domain 1 of 1, from 927 to 1129: score 248.9, E = 1e-71
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      +++ee++q+l+++a+++++gW++++   ++++++  +++ +      
    KIAA0189   927    LYMEENIQDLLRDAAERFKGWMSVP---GPQHTELACRKAP------ 964  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmey.raqWdkdvrciVs
                          +g+++R++++ ++v+a   ++ +l++ +++ra+Wd+d+     
    KIAA0189   965 -------DGHPLRLWKASTEVAA--PPAVVLHRVLReRALWDEDLL---- 1001 

                   kaetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDd
                   +a++le++++g       +l++yv++++a  p+++ RDfv++R+wr d  
    KIAA0189  1002 RAQVLEALMPG------VELYHYVTDSMA--PHPC-RDFVVLRMWRSD-- 1040 

                   HRFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngp
                      l++g++++v++S+d++q++pe     + vRa +l+S+yl+epcg g+
    KIAA0189  1041 ---LPRGGCLLVSQSLDPEQPVPE-----SGVRALMLTSQYLMEPCGLGR 1082 

                   ekskvtwvehvDlkgwlPvhwllrslvksgmafgakt..wvatlqrlcek
                     s++t+++++Dl+g++P +w+++++++ +++++ak+++ + tlq  + +
    KIAA0189  1083 --SRLTHICRADLRGRSP-DWYNKVFGHLCAMEVAKIrdSFPTLQAAGPE 1129 

                   <-*
                      
    KIAA0189     -     -    

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