hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19574248/chunk_1/iprscan-20080501-19574248.nocrc
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Query sequence: KIAA0194
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00505.9.fs HMG (high mobility group) box                   42.4    2.9e-11   1
PF00505.9.ls HMG (high mobility group) box                   34.3    3.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00505.9.fs   1/1     185   243 ..     1    59 [.    42.4  2.9e-11
PF00505.9.ls   1/1     185   253 ..     1    69 []    34.3  3.8e-07

Alignments of top-scoring domains:
PF00505.9.fs: domain 1 of 1, from 185 to 243: score 42.4, E = 2.9e-11
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      +K+P+sA++l++ + + k+ +e P+l  +eI kk++e W+ Ls +e+
    KIAA0194   185    TKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAER 231  

                   apYeakAekeKa<-*
                     Y +kA+ eK+   
    KIAA0194   232 SYYLEKAKLEKE    243  

PF00505.9.ls: domain 1 of 1, from 185 to 253: score 34.3, E = 3.8e-07
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      +K+P+sA++l++ + + k+ +e P+l  +eI kk++e W+ Ls +e+
    KIAA0194   185    TKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAER 231  

                   apYeakAekeKarYekempeYk<-*
                     Y +kA+ eK+    + +      
    KIAA0194   232 SYYLEKAKLEKEGLDPNSKLSA    253  

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