hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20042052/chunk_1/iprscan-20080501-20042052.nocrc
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Query sequence: KIAA0198
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         141.3    2.4e-39   6
PF00096.16.fs Zinc finger, C2H2 type                         129.5    8.9e-36   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/6     134   158 ..     1    24 []    27.7  1.2e-05
PF00096.16.ls   1/6     134   158 ..     1    24 []    29.7  9.3e-06
PF00096.16.fs   2/6     164   186 ..     1    24 []    23.5  0.00013
PF00096.16.ls   2/6     164   186 ..     1    24 []    25.5  0.00017
PF00096.16.ls   3/6     193   215 ..     1    24 []    20.4   0.0059
PF00096.16.ls   4/6     222   244 ..     1    24 []    19.2    0.014
PF00096.16.ls   5/6     257   279 ..     1    24 []    22.7   0.0012
PF00096.16.ls   6/6     285   308 ..     1    24 []    23.7   0.0006

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 6, from 134 to 158: score 27.7, E = 1.2e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+Cp  +Cgk+F +k+ L rH+ tH   
    KIAA0198   134    YSCPQlHCGKAFASKYKLYRHMATH    158  

PF00096.16.ls: domain 1 of 6, from 134 to 158: score 29.7, E = 9.3e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+Cp  +Cgk+F +k+ L rH+ tH   
    KIAA0198   134    YSCPQlHCGKAFASKYKLYRHMATH    158  

PF00096.16.fs: domain 2 of 6, from 164 to 186: score 23.5, E = 0.00013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F rk++L++Hl+tH   
    KIAA0198   164    HQCM-YCDKMFHRKDHLRNHLQTH    186  

PF00096.16.ls: domain 2 of 6, from 164 to 186: score 25.5, E = 0.00017
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F rk++L++Hl+tH   
    KIAA0198   164    HQCM-YCDKMFHRKDHLRNHLQTH    186  

PF00096.16.ls: domain 3 of 6, from 193 to 215: score 20.4, E = 0.0059
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +Cgk +++k  ++rHl +H   
    KIAA0198   193    LHCS-ECGKNYNTKLGYRRHLAMH    215  

PF00096.16.ls: domain 4 of 6, from 222 to 244: score 19.2, E = 0.014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +C ++F +   L  Hl+ H   
    KIAA0198   222    LSCK-VCLQTFESTQALLEHLKAH    244  

PF00096.16.ls: domain 5 of 6, from 257 to 279: score 22.7, E = 0.0012
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C+++F ++++ +rHl +H   
    KIAA0198   257    HPCD-HCDRRFYTRKDVRRHLVVH    279  

PF00096.16.ls: domain 6 of 6, from 285 to 308: score 23.7, E = 0.0006
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+ +C ++F rk++L+rH +++H   
    KIAA0198   285    FLCQ-YCAQRFGRKDHLTRHVKKsH    308  

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