HUGE

Gene/Protein Characteristic Table for KIAA0205

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00457
Accession No. :	D86960
Description :	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.
HUGO Gene Name :	lysophosphatidylglycerol acyltransferase 1 (LPGAT1)
Clone Name :	ha02324 [Vector Info]
Flexi ORF Clone :	pF1KSDA0205
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 6253 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4913 bp

Genome contig ID gi89161185r_209884960
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TTTTAAACCTAGAAAAAATAAAGTTGATTTTTTTC
Flanking genome sequence
(99992 - 99943)
----+----*----+----*----+----*----+----*----+----*
AATTAAAGTGCTTTTAATTCTTAGCAGTGGGGATGGGGCATGTGTGTTTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 209984952 210070737 8 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 391 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001170135	5.1e-173	97.5	lysophosphatidy...	Pan troglodytes
Q92604	1.7e-168	100.0	Acyl-CoA:lysoph...	Homo sapiens
XP_001170114	4.6e-168	99.7	lysophosphatidy...	Pan troglodytes
XP_001108531	8.7e-168	99.2	lysophosphatidy...	Macaca mulatta
BAE21857	2.6e-163	88.7	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMSmart IPR002123 116 232 SM00563 Phospholipid/glycerol acyltransferase

Search method	interpro_ID	From	To	Entry	Definition
HMMSmart	IPR002123	116	232	SM00563	Phospholipid/glycerol acyltransferase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 39 ALMRFAFMVVNNLVAIPSYICYV 61 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	39	ALMRFAFMVVNNLVAIPSYICYV	61	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: GTAAAGGGCTGGTCACACGTG
Primer_r	: GCTTCTTTTGGTGTTCACATC
PCR product length	: 104 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4913 bp
Genome contig ID	gi89161185r_209884960
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TTTTAAACCTAGAAAAAATAAAGTTGATTTTTTTC
Flanking genome sequence (99992 - 99943)	----+--------+--------+--------+--------+----* AATTAAAGTGCTTTTAATTCTTAGCAGTGGGGATGGGGCATGTGTGTTTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	209984952	210070737	8	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0205

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information