hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20222225/chunk_1/iprscan-20080501-20222225.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0209 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00326 52.3 6.5e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00326 1/1 23 80 .. 1 58 [] 52.3 6.5e-11 Alignments of top-scoring domains: SM00326: domain 1 of 1, from 23 to 80: score 52.3, E = 6.5e-11 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnr.tGke ++ vA+Y+++++++ Ls++ GD++++ e ++W++G l +++ + KIAA0209 23 RHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKhKMLQ 68 GlfPsnYVeeie<-* G+fP++++ ++e KIAA0209 69 GIFPKSFIHIKE 80 //