hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20303913/chunk_1/iprscan-20080501-20303913.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0214 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04799.4.ls fzo-like conserved region 428.6 7.8e-126 1 PF04799.4.fs fzo-like conserved region 426.6 3.2e-125 1 PF00350.13.ls Dynamin family 103.8 4.6e-28 1 PF00350.13.fs Dynamin family 102.1 1.6e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00350.13.fs 1/1 132 292 .. 1 217 [] 102.1 1.6e-27 PF00350.13.ls 1/1 132 292 .. 1 217 [] 103.8 4.6e-28 PF04799.4.fs 1/1 619 789 .. 1 171 [] 426.6 3.2e-125 PF04799.4.ls 1/1 619 789 .. 1 171 [] 428.6 7.8e-126 Alignments of top-scoring domains: PF00350.13.fs: domain 1 of 1, from 132 to 292: score 102.1, E = 1.6e-27 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges +a++G S GKS+v+na+l + LP +g+g +tT ++l ++ + KIAA0214 132 VAFFGRTSNGKSTVINAMLWDKV-LP-SGIG-HTTNCFLR-VEGTDG 174 peaieivsipgavkveykdflhplkkfedfsevreeieketdriagknkg e +++ e ++ ++ + +++++++ + + ag++++ KIAA0214 175 HE--------AFLLTEGSEE---KRSAKTVNQLAHALHQDKQLHAGSLVS 213 isseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSva + ++ + +++l+++l+L D+PG+d + KIAA0214 214 V---------------------MWPNSKCPLLKDDLVLMDSPGIDV--TT 240 vgdqqPeDieeqIrelteeyiskpadiILaVvpAnvaLdlstssdealfl + d +++++++ ad++++V ++ + l ++ e+ f KIAA0214 241 ELD-----------SWIDKFC-LDADVFVLVANSES--TLMQT--EKHFF 274 arevdpkgerdktigVltKd<-* + + + i++l++ KIAA0214 275 HKVSERLSRP--NIFILNNR 292 PF00350.13.ls: domain 1 of 1, from 132 to 292: score 103.8, E = 4.6e-28 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges +a++G S GKS+v+na+l + LP +g+g +tT ++l ++ + KIAA0214 132 VAFFGRTSNGKSTVINAMLWDKV-LP-SGIG-HTTNCFLR-VEGTDG 174 peaieivsipgavkveykdflhplkkfedfsevreeieketdriagknkg e +++ e ++ ++ + +++++++ + + ag++++ KIAA0214 175 HE--------AFLLTEGSEE---KRSAKTVNQLAHALHQDKQLHAGSLVS 213 isseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSva + ++ + +++l+++l+L D+PG+d + KIAA0214 214 V---------------------MWPNSKCPLLKDDLVLMDSPGIDV--TT 240 vgdqqPeDieeqIrelteeyiskpadiILaVvpAnvaLdlstssdealfl + d +++++++ ad++++V ++ + l ++ e+ f KIAA0214 241 ELD-----------SWIDKFC-LDADVFVLVANSES--TLMQT--EKHFF 274 arevdpkgerdktigVltKd<-* + + + i++l++ KIAA0214 275 HKVSERLSRP--NIFILNNR 292 PF04799.4.fs: domain 1 of 1, from 619 to 789: score 426.6, E = 3.2e-125 *->lpPlvsgnseqqemmislVtglASvtSrGSlGilvVgGvvwKavGWr +pPl++g+++q+e+m+s+VtglAS+tSr+S+GilvVgGvvwKavGWr KIAA0214 619 MPPLPQGSLTQEEFMVSMVTGLASLTSRTSMGILVVGGVVWKAVGWR 665 viavsgaLYGsLYlYERlsWTtaAKERaFKsQFvrhatekLrmvvsaTss +ia+s++LYG+LY+YERl+WTt+AKERaFK+QFv+ha+ekL++v+s+T+s KIAA0214 666 LIALSFGLYGLLYVYERLTWTTKAKERAFKRQFVEHASEKLQLVISYTGS 715 nCshQvqQeLattFarLcaqVdetlrdLnnelaeLkkqIdaleslQkslK nCshQvqQeL++tFa+Lc+qVd+t+++L++e+a+++k+I++l+slQ+++K KIAA0214 716 NCSHQVQQELSGTFAHLCQQVDVTRENLEQEIAAMNKKIEVLDSLQSKAK 765 lLRnKAvfLaseLeqFthqYLrss<-* lLRnKA++L+seL++FthqYL++s KIAA0214 766 LLRNKAGWLDSELNMFTHQYLQPS 789 PF04799.4.ls: domain 1 of 1, from 619 to 789: score 428.6, E = 7.8e-126 *->lpPlvsgnseqqemmislVtglASvtSrGSlGilvVgGvvwKavGWr +pPl++g+++q+e+m+s+VtglAS+tSr+S+GilvVgGvvwKavGWr KIAA0214 619 MPPLPQGSLTQEEFMVSMVTGLASLTSRTSMGILVVGGVVWKAVGWR 665 viavsgaLYGsLYlYERlsWTtaAKERaFKsQFvrhatekLrmvvsaTss +ia+s++LYG+LY+YERl+WTt+AKERaFK+QFv+ha+ekL++v+s+T+s KIAA0214 666 LIALSFGLYGLLYVYERLTWTTKAKERAFKRQFVEHASEKLQLVISYTGS 715 nCshQvqQeLattFarLcaqVdetlrdLnnelaeLkkqIdaleslQkslK nCshQvqQeL++tFa+Lc+qVd+t+++L++e+a+++k+I++l+slQ+++K KIAA0214 716 NCSHQVQQELSGTFAHLCQQVDVTRENLEQEIAAMNKKIEVLDSLQSKAK 765 lLRnKAvfLaseLeqFthqYLrss<-* lLRnKA++L+seL++FthqYL++s KIAA0214 766 LLRNKAGWLDSELNMFTHQYLQPS 789 //