hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20335388/chunk_1/iprscan-20080501-20335388.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0216 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.fs Myosin head (motor domain) 281.4 9.5e-83 5 PF00063.11.ls Myosin head (motor domain) 226.0 7.7e-65 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 37.0 9.9e-10 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 39.0 1.5e-08 1 PF02370.7.ls M protein repeat 36.9 6.3e-08 7 PF01920.10.fs Prefoldin subunit 25.9 1.4e-06 5 PF02370.7.fs M protein repeat 28.4 2.1e-06 6 PF00612.17.fs IQ calmodulin-binding motif 23.3 7.4e-06 1 PF00612.17.ls IQ calmodulin-binding motif 25.3 0.00021 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/1 233 321 .. 1 86 [] 39.0 1.5e-08 PF00595.14.fs 1/1 233 321 .. 1 86 [] 37.0 9.9e-10 PF00063.11.fs 1/5 420 628 .. 1 226 [. 206.8 6.8e-61 PF00063.11.ls 1/1 420 1186 .. 1 791 [] 226.0 7.7e-65 PF00063.11.fs 2/5 652 726 .. 257 339 .. 20.5 2.5e-06 PF00063.11.fs 3/5 766 854 .. 370 483 .. 14.1 0.00019 PF00063.11.fs 5/5 1099 1186 .. 698 791 .] 35.4 1.1e-10 PF00612.17.ls 1/1 1202 1222 .. 1 21 [] 25.3 0.00021 PF00612.17.fs 1/1 1202 1222 .. 1 21 [] 23.3 7.4e-06 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 1, from 233 to 321: score 39.0, E = 1.5e-08 *->evtlekedkrgglGfsikggsdkga.......dkgifvsevlpGsga e+ l+++ g +Gfs+++ + +++++++ + ++ +e+ +G KIAA0216 233 ELELQRR-PTGDFGFSLRRTTMLDRgpegqacRRVVHFAEPGAG-TK 277 AeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + a G L +GD+++++NG ++e+ s +e+v+++++sg+ +v+L+v+ KIAA0216 278 DLALG-LVPGDRLVEINGHNVESKSRDEIVEMIRQSGD-SVRLKVQ 321 PF00595.14.fs: domain 1 of 1, from 233 to 321: score 37.0, E = 9.9e-10 *->evtlekedkrgglGfsikggsdkga.......dkgifvsevlpGsga e+ l+++ g +Gfs+++ + +++++++ + ++ +e+ +G KIAA0216 233 ELELQRR-PTGDFGFSLRRTTMLDRgpegqacRRVVHFAEPGAG-TK 277 AeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + a G L +GD+++++NG ++e+ s +e+v+++++sg+ +v+L+v+ KIAA0216 278 DLALG-LVPGDRLVEINGHNVESKSRDEIVEMIRQSGD-SVRLKVQ 321 PF00063.11.fs: domain 1 of 5, from 420 to 628: score 206.8, E = 6.8e-61 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +eDl+ L ylnE svLh L++RY + l +TY G++L ++ P + +p KIAA0216 420 LEDLASLVYLNESSVLHTLRQRYG-ASLLHTYAGPSLLVLGP-RGAP 464 .iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG +Y+e+++++++G rr++++PHi+A+A AYR+Ml +++QsI++ G SG KIAA0216 465 aVYSEKVMHMFKGCRREDMAPHIYAVAQTAYRAMLMSRQDQSIILLGSSG 514 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsled.qilqsNPiL GKT++ ++ qYlA ++g ++ +++ s+e+ q l+ +L KIAA0216 515 SGKTTSCQHLVQYLATIAGISG----------NKVFSVEKwQALY--TLL 552 EAFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRV EAFGN T+ N N +RF ++ + Fd +G++ +++ I+t LLEK RV KIAA0216 553 EAFGNSPTIINGNATRFSQILSLDFDQAGQV----ASASIQTMLLEKLRV 598 vyQtegERNFHIFYQLLagasaqeekkeLkL<-* ++ ++ E +F +FY+LLa + + + eL+L KIAA0216 599 ARRPASEATFNVFYYLLACGDGTL-RTELHL 628 PF00063.11.ls: domain 1 of 1, from 420 to 1186: score 226.0, E = 7.7e-65 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +eDl+ L ylnE svLh L++RY + l +TY G++L ++ P + +p KIAA0216 420 LEDLASLVYLNESSVLHTLRQRYG-ASLLHTYAGPSLLVLGP-RGAP 464 .iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG +Y+e+++++++G rr++++PHi+A+A AYR+Ml +++QsI++ G SG KIAA0216 465 aVYSEKVMHMFKGCRREDMAPHIYAVAQTAYRAMLMSRQDQSIILLGSSG 514 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsled.qilqsNPiL GKT++ ++ qYlA ++g ++ +++ s+e+ q l+ +L KIAA0216 515 SGKTTSCQHLVQYLATIAGISG----------NKVFSVEKwQALY--TLL 552 EAFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRV EAFGN T+ N N +RF ++ + Fd +G++ +++ I+t LLEK RV KIAA0216 553 EAFGNSPTIINGNATRFSQILSLDFDQAGQV----ASASIQTMLLEKLRV 598 vyQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTyn ++ ++ E +F +FY+LLa + + + eL+L L ++ KIAA0216 599 ARRPASEATFNVFYYLLACGDGTL-RTELHLN---------HLAENN--- 635 Pcytv......DdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILh + + + ++ a+ F ++ A+k++G++ eq+ ++ ilAAI h KIAA0216 636 -VFGIvplakpEEKQKAAQQFSKLQAAMKVLGISPDEQKACWFILAAIYH 684 LGNieGFkqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaL LG +++ +e+ G + + ++e ++++a LLG + eeL a+ KIAA0216 685 LGAAG-ATKEA----AEA--GRKQFARHEW-AQKAAYLLGCSLEELSSAI 726 lsrriktGgggkRretvtkpqnveq............AryaRDALAKaiY ++ +G g r+t + q +e+++ +++++++ +A + +A ++Y KIAA0216 727 -FKHQHKG-GTLQRST-SFRQGPEEsglgdgtgpklsALECLEGMAAGLY 773 sRLFdWiVekiNkaLsakeQasdSrGGqaaegdDTVSITVVdlPraaldk s LF +V+ +N+aL++ + ++ KIAA0216 774 SELFTLLVSLVNRALKSSQ-----------------------------HS 794 tasfIGvLDIyGF......EIFaekNSFEQLcINYvNEKLQQfFNhhmFk s++ + D +GF++++++ SFE Lc NY+ +LQ +F +++F+ KIAA0216 795 LCSMM-IVDTPGFqnpeqgGSA-RGASFEELCHNYTQDRLQRLFHERTFV 842 lEQEEYkrEgIeWtfIdyg...lDnqaci...............dLIEkK E E Yk E+Ie f d +++++D+ a +++ ++++ ++ ++d E+ KIAA0216 843 QELERYKEENIELAFDDLEpptDDSVAAVdqashqslvrslartD--EA- 889 kPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAqkpgrfkk G+l lL+Ee ++P a+++t+l+ L++ + p k+g+ ++ KIAA0216 890 --RGLLWLLEEEALVPGASEDTLLERLFSYY---GP--QEG-DKKGQSPL 931 gksrqgkteFiikHYAGd..VeYnaegfle...KNkDpLfddlisllksS ++ ++ +F + H G++ VeYn++g+l ++ N p +++ + ll+ S KIAA0216 932 L-HSSKPHHFLLGHSHGTnwVEYNVTGWLNytkQN--PATQNAPRLLQDS 978 sdepllaeLFpeeel...............seAaNltlkapdfeadfdee ++ +++++LF + + + +++ + +++s a ++ KIAA0216 979 QK-KIISNLFLGRAGsatvlsgsiagleggSQLALRR------------- 1014 eaaaksaklgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPH a + +++ g+ + +++ + +q k ++++L+ t+ + H KIAA0216 1015 ------ATSMRKTFTTGMAAVKKKSLCIQMKLQVDALIDTIKKS---KLH 1055 fvRCIKPNekKkag.............................qFDaslV fv C P + ag++++ ++++ +++++ + +++++ + + q+D +l KIAA0216 1056 FVHCFLPVAEGWAGeprsassrrvsssseldlpsgdhceagllQLDVPLL 1105 lhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwpsgfrpew ++Qlr + +L+ R r+G+P ++f+eF++R+ +Lap+ ++ r KIAA0216 1106 RTQLRGSRLLD-AMRMYRQGYPDHMVFSEFRRRFDVLAPHLTKKHGRNYI 1154 vgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* v d+++++e +L+ l +l+k+ +G +++FfR KIAA0216 1155 VVDERRAVEELLECL-----DLEKSSCCMGLSRVFFR 1186 PF00063.11.fs: domain 2 of 5, from 652 to 726: score 20.5, E = 2.5e-06 *->aeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFkqdqatT a+ F ++ A+k++G++ eq+ ++ ilAAI hLG +++ KIAA0216 652 AQQFSKLQAAMKVLGISPDEQKACWFILAAIYHLGAAG-ATKEA--- 694 GneeqAGvtvsedteeileiiaeLLGvDaeeLekaL<-* +e+ G + + ++e ++++a LLG + eeL a+ KIAA0216 695 -AEA--GRKQFARHEW-AQKAAYLLGCSLEELSSAI 726 PF00063.11.fs: domain 3 of 5, from 766 to 854: score 14.1, E = 0.00019 *->DALAKaiYsRLFdWiVekiNkaLsakeQasdSrGGqaaegdDTVSIT + +A ++Ys LF +V+ +N+aL++ + KIAA0216 766 EGMAAGLYSELFTLLVSLVNRALKSSQ-------------------- 792 VVdlPraaldktasfIGvLDIyGF......EIFaekNSFEQLcINYvNEK ++ s++ + D +GF++++++ SFE Lc NY+ + KIAA0216 793 ---------HSLCSMM-IVDTPGFqnpeqgGSA-RGASFEELCHNYTQDR 831 LQQfFNhhmFklEQEEYkrEgIe<-* LQ +F +++F+ E E Yk E+Ie KIAA0216 832 LQRLFHERTFVQELERYKEENIE 854 PF00063.11.fs: domain 5 of 5, from 1099 to 1186: score 35.4, E = 1.1e-10 *->qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapk q+D +l ++Qlr + +L+ R r+G+P ++f+eF++R+ +Lap+ KIAA0216 1099 QLDVPLLRTQLRGSRLLD-AMRMYRQGYPDHMVFSEFRRRFDVLAPH 1144 twpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* ++ r v d+++++e +L+ l +l+k+ +G +++FfR KIAA0216 1145 LTKKHGRNYIVVDERRAVEELLECL-----DLEKSSCCMGLSRVFFR 1186 PF00612.17.ls: domain 1 of 1, from 1202 to 1222: score 25.3, E = 0.00021 *->rraaikIQaawRGylaRkryk<-* r +++Qaa+RGylaR+++k KIAA0216 1202 SRNLTLFQAACRGYLARQHFK 1222 PF00612.17.fs: domain 1 of 1, from 1202 to 1222: score 23.3, E = 7.4e-06 *->rraaikIQaawRGylaRkryk<-* r +++Qaa+RGylaR+++k KIAA0216 1202 SRNLTLFQAACRGYLARQHFK 1222 //