hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20390045/chunk_1/iprscan-20080501-20390045.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0219 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02985.12.ls HEAT repeat 389.4 5.1e-114 28 PF02985.12.fs HEAT repeat 339.0 7.4e-99 29 PF00514.13.fs Armadillo/beta-catenin-like repeat 35.2 6.1e-09 5 PF03130.6.fs PBS lyase HEAT-like repeat 28.9 9.9e-08 8 PF03130.6.ls PBS lyase HEAT-like repeat 34.5 3.4e-07 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 10/28 1458 1494 .. 1 36 [] 21.9 0.0021 PF02985.12.ls 11/28 1497 1532 .. 1 36 [] 13.8 0.58 PF02985.12.ls 12/28 1537 1573 .. 1 36 [] 22.6 0.0013 PF02985.12.ls 13/28 1614 1650 .. 1 36 [] 21.2 0.0034 PF02985.12.fs 15/29 1656 1692 .. 1 36 [] 28.4 5.5e-07 PF02985.12.ls 14/28 1656 1692 .. 1 36 [] 30.4 5.9e-06 PF02985.12.ls 16/28 1776 1812 .. 1 36 [] 24.5 0.00035 PF02985.12.ls 17/28 1814 1850 .. 1 36 [] 23.9 0.00053 PF02985.12.ls 18/28 1924 1960 .. 1 36 [] 19.6 0.011 PF02985.12.ls 19/28 1962 1998 .. 1 36 [] 17.7 0.038 PF02985.12.ls 20/28 2004 2040 .. 1 36 [] 25.0 0.00024 PF02985.12.ls 23/28 2191 2227 .. 1 36 [] 19.8 0.0091 PF02985.12.ls 26/28 2346 2382 .. 1 36 [] 26.8 7e-05 PF02985.12.ls 27/28 2425 2461 .. 1 36 [] 26.4 9.7e-05 PF02985.12.ls 28/28 2591 2627 .. 1 36 [] 13.9 0.53 Alignments of top-scoring domains: PF02985.12.ls: domain 10 of 28, from 1458 to 1494: score 21.9, E = 0.0021 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+++ ++lp+ll +++D + VReaA + a++++l KIAA0219 1458 EpYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNL 1494 PF02985.12.ls: domain 11 of 28, from 1497 to 1532: score 13.8, E = 0.58 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ +lp ll +l+ ++++ ++ ++e Lga+a ++ KIAA0219 1497 HgVK-LVLPSLLAALEEESWRTKAGSVELLGAMAYCA 1532 PF02985.12.ls: domain 12 of 28, from 1537 to 1573: score 22.6, E = 0.0013 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++l++++p l + l+D++ +V++a +aL ++ +v+ KIAA0219 1537 SsCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVI 1573 PF02985.12.ls: domain 13 of 28, from 1614 to 1650: score 21.2, E = 0.0034 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ l ++p+++++++D + + R++Aa+ +g++++ KIAA0219 1614 ApSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSLT 1650 PF02985.12.fs: domain 15 of 29, from 1656 to 1692: score 28.4, E = 5.5e-07 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++l+++ p l l Dp+peVR +a+aLga+++ + KIAA0219 1656 ApYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGM 1692 PF02985.12.ls: domain 14 of 28, from 1656 to 1692: score 30.4, E = 5.9e-06 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++l+++ p l l Dp+peVR +a+aLga+++ + KIAA0219 1656 ApYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGM 1692 PF02985.12.ls: domain 16 of 28, from 1776 to 1812: score 24.5, E = 0.00035 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ ++p++lk+l D+++ VR++A++a ++++ + KIAA0219 1776 TpYVGPIIPCILKALADENEFVRDTALRAGQRVISMY 1812 PF02985.12.ls: domain 17 of 28, from 1814 to 1850: score 23.9, E = 0.00053 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+++ llp l ++l D+ +++R ++++ Lg+l+ ++ KIAA0219 1814 EtAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHI 1850 PF02985.12.ls: domain 18 of 28, from 1924 to 1960: score 19.6, E = 0.011 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++il++l+ lll l ++ ++ R Aa++Lg+l+++l KIAA0219 1924 ReILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKL 1960 PF02985.12.ls: domain 19 of 28, from 1962 to 1998: score 17.7, E = 0.038 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+il+e++p+l ++l+++ ++ R+ ++ L+++++ KIAA0219 1962 EkILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKST 1998 PF02985.12.ls: domain 20 of 28, from 2004 to 2040: score 25.0, E = 0.00024 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + ++l+p+ k+l+Dp +eVReaAa+++ +l + + KIAA0219 2004 LyFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTI 2040 PF02985.12.ls: domain 23 of 28, from 2191 to 2227: score 19.8, E = 0.0091 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++l +l+ l++l+nD++p V e + aL a+ ++l KIAA0219 2191 TsHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKL 2227 PF02985.12.ls: domain 26 of 28, from 2346 to 2382: score 26.8, E = 7e-05 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++l++l ++ k+l+D++ VR+ Aa aLg+l++++ KIAA0219 2346 KpFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIH 2382 PF02985.12.ls: domain 27 of 28, from 2425 to 2461: score 26.4, E = 9.7e-05 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + i+++++ lll++l++++++ R ++a +Lg+l+ +l KIAA0219 2425 AvIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFL 2461 PF02985.12.ls: domain 28 of 28, from 2591 to 2627: score 13.9, E = 0.53 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++++ +l +ll+ +D++ VR+ + +a+++l++ KIAA0219 2591 PqAIKPILKALLDNTKDKNTVVRAYSDQAIVNLLKMR 2627 //