hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20442890/chunk_1/iprscan-20080501-20442890.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0222 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 215.1 1.5e-61 10 PF00096.16.fs Zinc finger, C2H2 type 197.6 2.6e-56 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/10 75 97 .. 1 24 [] 27.2 1.6e-05 PF00096.16.ls 1/10 75 97 .. 1 24 [] 29.2 1.4e-05 PF00096.16.ls 2/10 103 125 .. 1 24 [] 30.8 4.5e-06 PF00096.16.fs 2/10 103 125 .. 1 24 [] 28.8 6.2e-06 PF00096.16.ls 5/10 289 311 .. 1 24 [] 29.3 1.2e-05 PF00096.16.fs 5/10 289 311 .. 1 24 [] 27.4 1.4e-05 PF00096.16.ls 6/10 317 339 .. 1 24 [] 24.0 0.00051 PF00096.16.ls 10/10 1139 1161 .. 1 24 [] 28.7 2e-05 PF00096.16.fs 10/10 1139 1161 .. 1 24 [] 26.7 2.1e-05 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 10, from 75 to 97: score 27.2, E = 1.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksF +s+L +H+r+H KIAA0222 75 HTCC-ICGKSFPFQSSLSQHMRKH 97 PF00096.16.ls: domain 1 of 10, from 75 to 97: score 29.2, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksF +s+L +H+r+H KIAA0222 75 HTCC-ICGKSFPFQSSLSQHMRKH 97 PF00096.16.ls: domain 2 of 10, from 103 to 125: score 30.8, E = 4.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +C+ + s+k+nLk H+r+H KIAA0222 103 YKCP-YCDHRASQKGNLKIHIRSH 125 PF00096.16.fs: domain 2 of 10, from 103 to 125: score 28.8, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +C+ + s+k+nLk H+r+H KIAA0222 103 YKCP-YCDHRASQKGNLKIHIRSH 125 PF00096.16.ls: domain 5 of 10, from 289 to 311: score 29.3, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++Fs+ Lk+H+++H KIAA0222 289 FPCE-VCGQAFSQTWFLKAHMKKH 311 PF00096.16.fs: domain 5 of 10, from 289 to 311: score 27.4, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++Fs+ Lk+H+++H KIAA0222 289 FPCE-VCGQAFSQTWFLKAHMKKH 311 PF00096.16.ls: domain 6 of 10, from 317 to 339: score 24.0, E = 0.00051 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++F+ + Lk+H++ H KIAA0222 317 HGCH-ICGRRFKEPWFLKNHMKAH 339 PF00096.16.ls: domain 10 of 10, from 1139 to 1161: score 28.7, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksF ++++L++H+r H KIAA0222 1139 FVCI-ECGKSFHQPGHLRAHMRAH 1161 PF00096.16.fs: domain 10 of 10, from 1139 to 1161: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksF ++++L++H+r H KIAA0222 1139 FVCI-ECGKSFHQPGHLRAHMRAH 1161 //