hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20442890/chunk_1/iprscan-20080501-20442890.nocrc
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Query sequence: KIAA0222
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 216.4    2.6e-60  10

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/10     75    97 ..     1    23 []    25.4    0.008
SM00355      2/10    103   125 ..     1    23 []    29.5  0.00045
SM00355      3/10    215   238 ..     1    23 []    19.0     0.65
SM00355      4/10    241   264 ..     1    23 []    19.7     0.41
SM00355      5/10    289   311 ..     1    23 []    26.5   0.0036
SM00355      6/10    317   339 ..     1    23 []    23.1    0.039
SM00355      7/10    376   398 ..     1    23 []    14.4      7.4
SM00355      8/10    556   578 ..     1    23 []    19.0     0.67
SM00355      9/10    801   824 ..     1    23 []     9.2       29
SM00355     10/10   1139  1161 ..     1    23 []    30.5  0.00024

Alignments of top-scoring domains:
SM00355: domain 1 of 10, from 75 to 97: score 25.4, E = 0.008
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C i Cgksf+ +++L +Hmr+H   
    KIAA0222    75    HTCCI-CGKSFPFQsSLSQHMRKH    97   

SM00355: domain 2 of 10, from 103 to 125: score 29.5, E = 0.00045
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykCp+ C+ + s+k++Lk H+r+H   
    KIAA0222   103    YKCPY-CDHRASQKgNLKIHIRSH    125  

SM00355: domain 3 of 10, from 215 to 238: score 19.0, E = 0.65
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C++ C+ +f +k++L+ H+ + H   
    KIAA0222   215    VQCSF-CKSQFERKkDLELHVHqAH    238  

SM00355: domain 4 of 10, from 241 to 264: score 19.7, E = 0.41
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC + C++ + ++++L  H+ + H   
    KIAA0222   241    FKCRL-CSYATLREeSLLSHIErDH    264  

SM00355: domain 5 of 10, from 289 to 311: score 26.5, E = 0.0036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cg+ fs+   Lk Hm++H   
    KIAA0222   289    FPCEV-CGQAFSQTwFLKAHMKKH    311  

SM00355: domain 6 of 10, from 317 to 339: score 23.1, E = 0.039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cg++f+ +  Lk+Hm+ H   
    KIAA0222   317    HGCHI-CGRRFKEPwFLKNHMKAH    339  

SM00355: domain 7 of 10, from 376 to 398: score 14.4, E = 7.4
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C + Cg  f++ ++L+ H  +H   
    KIAA0222   376    EVCAK-CGNLFTNLdSLNAHNAIH    398  

SM00355: domain 8 of 10, from 556 to 578: score 19.0, E = 0.67
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C + Cgk f+++++++ H rvH   
    KIAA0222   556    SECFE-CGKIFRTYhQMVLHSRVH    578  

SM00355: domain 9 of 10, from 801 to 824: score 9.2, E = 29
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + Cp+ C+ ++  ++ L  H r  H   
    KIAA0222   801    HPCPY-CSHKTYYPeVLWMHKRiWH    824  

SM00355: domain 10 of 10, from 1139 to 1161: score 30.5, E = 0.00024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgksf+++++L+ Hmr H   
    KIAA0222  1139    FVCIE-CGKSFHQPgHLRAHMRAH    1161 

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