hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20460638/chunk_1/iprscan-20080501-20460638.nocrc
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Query sequence: KIAA0223
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00324                                                 263.7    1.4e-74   1
SM00055                                                  79.9    3.2e-19   1
SM00109                                                  42.9    4.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00055    1/1     303   390 ..     1   103 []    79.9  3.2e-19
SM00109    1/1     730   776 ..     1    61 []    42.9  4.3e-08
SM00324    1/1     801  1000 ..     1   193 []   263.7  1.4e-74

Alignments of top-scoring domains:
SM00055: domain 1 of 1, from 303 to 390: score 79.9, E = 3.2e-19
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      + +++e+    G++a+l + kn++++++dl+++l++R ++E+e+Ak+
    KIAA0223   303    LLQRCEG----GVDAALLYAKNMAKYMKDLISYLEKRTTLEMEFAKG 345  

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   Lqk++++          +r+++++e+++  l  +++  l++  ++++s+ 
    KIAA0223   346 LQKIAHN----------CRQSVMQEPHMPLL-SIYSLALEQDLEFGHSMV 384  

                   qlsedL<-*
                   q    L   
    KIAA0223   385 QAVGTL    390  

SM00109: domain 1 of 1, from 730 to 776: score 42.9, E = 4.3e-08
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                       +++ r+ ++p++C+ C++++++         g +C+eC+++cHkkC
    KIAA0223   730    RTHRLRKLrTPAKCRECNSYVYFQ--------GAECEECCLACHKKC 768  

                   aekvpaqshksglsC<-*
                   +e ++         C   
    KIAA0223   769 LETLAI-------QC    776  

SM00324: domain 1 of 1, from 801 to 1000: score 263.7, E = 1.4e-74
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + +P iv kC++++e+r+l+t+GIYRv+G+k+rv++L++af++g++ 
    KIAA0223   801    DGVPFIVKKCVCEIERRALRTKGIYRVNGVKTRVEKLCQAFENGKEl 847  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   +             +l+++++hd++ +LKlyLR+LPePL+ f+ly+e++ 
    KIAA0223   848 V-------------ELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVG 884  

                   aaklyq.i.e.a.t.srk.q.s.eksedeeerlralrellslLPpanrat
                   +ak+ ++++++a++ sr++q+++e++   ++   +lrell+ LPp+nra 
    KIAA0223   885 LAKDSLkAeAeAkAaSRGrQdGsESEAVAVALAGRLRELLRDLPPENRAS 934  

                   LryLl.HLnrVaehsevNkMtarNLAivFgPtLlrpp..........ltd
                   L+yLl+HL+r+ e ++ NkMt+ NL+ivFgPtLlrp++++ + + ++l+d
    KIAA0223   935 LQYLLrHLRRIVEVEQDNKMTPGNLGIVFGPTLLRPRpteatvslssLVD 984  

                   ikhqnkvvetlienad<-*
                   + hq++v+etli+++    
    KIAA0223   985 YPHQARVIETLIVHYG    1000 

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