hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20474339/chunk_1/iprscan-20080501-20474339.nocrc
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Query sequence: KIAA0224
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF07717.6.fs Domain of unknown function (DUF1605)         107.8    1.9e-30   1
PF07717.6.ls Domain of unknown function (DUF1605)         109.6    8.6e-30   1
PF04408.13.ls Helicase associated domain (HA2)              95.7    1.3e-25   1
PF04408.13.fs Helicase associated domain (HA2)              94.0    4.1e-25   1
PF00271.21.fs Helicase conserved C-terminal domain          59.6    8.6e-17   1
PF00271.21.ls Helicase conserved C-terminal domain          61.6    2.4e-15   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00271.21.fs   1/1     796   890 ..     1    76 []    59.6  8.6e-17
PF00271.21.ls   1/1     796   890 ..     1    76 []    61.6  2.4e-15
PF04408.13.ls   1/1     951  1041 ..     1   124 []    95.7  1.3e-25
PF04408.13.fs   1/1     951  1041 ..     1   124 []    94.0  4.1e-25
PF07717.6.fs   1/1    1075  1177 ..     1   139 []   107.8  1.9e-30
PF07717.6.ls   1/1    1075  1177 ..     1   139 []   109.6  8.6e-30

Alignments of top-scoring domains:
PF00271.21.fs: domain 1 of 1, from 796 to 890: score 59.6, E = 8.6e-17
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      l ++p + v++++++l+++ + +i++k  +g +k++vaT++a+++++
    KIAA0224   796    LEnAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLT 842  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   + ++ +VI+ ++ + +  +++ + +  +  p + ++  QR GRaGR G  
    KIAA0224   843 VDGIMFVIDSGYcklkvfnprigmdalqiyPISQANANQRSGRAGRTG   890  

                   *
                    
    KIAA0224     -   -    

PF00271.21.ls: domain 1 of 1, from 796 to 890: score 61.6, E = 2.4e-15
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      l ++p + v++++++l+++ + +i++k  +g +k++vaT++a+++++
    KIAA0224   796    LEnAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLT 842  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   + ++ +VI+ ++ + +  +++ + +  +  p + ++  QR GRaGR G  
    KIAA0224   843 VDGIMFVIDSGYcklkvfnprigmdalqiyPISQANANQRSGRAGRTG   890  

                   *
                    
    KIAA0224     -   -    

PF04408.13.ls: domain 1 of 1, from 951 to 1041: score 95.7, E = 1.3e-25
                   *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf
                      ++   L +LgAl D+ g LT ++Grlm+++PldP L+kmL + ++  
    KIAA0224   951    NSMYQLWILGAL-DNTGGLT-STGRLMVEFPLDPALSKML-IVSCDM 994  

                   gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla
                   gc+ e+l+i+++Lsv + +f++          p++++e+ +         
    KIAA0224   995 GCSSEILLIVSMLSV-PAIFYR----------PKGREEESD-----Q--I 1026 

                   rakfegrsllksarsrltslsDhlall<-*
                   r+kf       + ++     sDhl++l   
    KIAA0224  1027 REKF-------AVPE-----SDHLTYL    1041 

PF04408.13.fs: domain 1 of 1, from 951 to 1041: score 94.0, E = 4.1e-25
                   *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf
                      ++   L +LgAl D+ g LT ++Grlm+++PldP L+kmL + ++  
    KIAA0224   951    NSMYQLWILGAL-DNTGGLT-STGRLMVEFPLDPALSKML-IVSCDM 994  

                   gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla
                   gc+ e+l+i+++Lsv + +f++          p++++e+ +         
    KIAA0224   995 GCSSEILLIVSMLSV-PAIFYR----------PKGREEESD-----Q--I 1026 

                   rakfegrsllksarsrltslsDhlall<-*
                   r+kf       + ++     sDhl++l   
    KIAA0224  1027 REKF-------AVPE-----SDHLTYL    1041 

PF07717.6.fs: domain 1 of 1, from 1075 to 1177: score 107.8, E = 1.9e-30
                   *->sQLlrilkrlglilnessgdiellrkallaGlypnvArreedrggkg
                       QL++i+  + + l +++ d++++rk+++a++++++A++     g g
    KIAA0224  1075    AQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKL----KGIG 1117 

                   sYktlr.svrlpvrskrsgvkdgeekgkfktndgnVfiHPsSvLfntkkk
                   +Y+ +r++++                         +++HP+S+Lf+++ +
    KIAA0224  1118 EYVNIRtGMP-------------------------CHLHPTSSLFGMGYT 1142 

                   ppkwivytel.vetskkgdgskvyardvtaispewllllapgki<-*
                   p  +ivy+el ++t k      +y+ +vta++ ewl++l+p      
    KIAA0224  1143 P-DYIVYHELvMTT-K------EYMQCVTAVDGEWLAELGP-MF    1177 

PF07717.6.ls: domain 1 of 1, from 1075 to 1177: score 109.6, E = 8.6e-30
                   *->sQLlrilkrlglilnessgdiellrkallaGlypnvArreedrggkg
                       QL++i+  + + l +++ d++++rk+++a++++++A++     g g
    KIAA0224  1075    AQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKL----KGIG 1117 

                   sYktlr.svrlpvrskrsgvkdgeekgkfktndgnVfiHPsSvLfntkkk
                   +Y+ +r++++                         +++HP+S+Lf+++ +
    KIAA0224  1118 EYVNIRtGMP-------------------------CHLHPTSSLFGMGYT 1142 

                   ppkwivytel.vetskkgdgskvyardvtaispewllllapgki<-*
                   p  +ivy+el ++t k      +y+ +vta++ ewl++l+p      
    KIAA0224  1143 P-DYIVYHELvMTT-K------EYMQCVTAVDGEWLAELGP-MF    1177 

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