hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20474339/chunk_1/iprscan-20080501-20474339.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0224 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00487 128.4 8.1e-34 1 SM00490 81.2 1.2e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00487 1/1 559 743 .. 1 219 [] 128.4 8.1e-34 SM00490 1/1 787 890 .. 1 86 [] 81.2 1.2e-19 Alignments of top-scoring domains: SM00487: domain 1 of 1, from 559 to 743: score 128.4, E = 8.1e-34 *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg + + +++Q+e + +++++ vi++++TGsGKT++++++l+e ++ KIAA0224 559 QYlPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYT- 604 kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl +++ + +++P+r++a+ +a+++++++ + ++g KIAA0224 605 --------DYGMIGCTQPRRVAAMSVAKRVSEEM----------GGNLGE 636 ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi G + ++++++s++t i ++T g+Ll++ ++ +l++++ +i KIAA0224 637 EVGyAI-----RFEDCTSENTLIKYMTDGILLRESlREA--DLdHYSAII 679 lDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppeien +DEaH+++ ++d+l +ll+++ +++++++++ SAT+ + e+ KIAA0224 680 MDEAHERS--------LNTDVLFgLLREVvarRSDLKLIVTSATM-DAEK 720 llklflnlpelfpnpvfisvgftlepieqf<-* +++ f+n p+f ++g+ +p+++ KIAA0224 721 FAAFFGN------VPIFHIPGR-TFPVDIL 743 SM00490: domain 1 of 1, from 787 to 890: score 81.2, E = 1.2e-19 *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva d++ e+L+el +p + v++++++l+++ + +i++k ++g +k++va KIAA0224 787 DQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVA 833 TdvaerGlDipgvdlVInydl..................pwspasyiQRi T++ae++l+++g+ +VI+ + + + +++ + + + p+s a++ QR+ KIAA0224 834 TNIAETSLTVDGIMFVIDSGYcklkvfnprigmdalqiyPISQANANQRS 883 GRaGRaG<-* GRaGR G KIAA0224 884 GRAGRTG 890 //