HUGE

Gene/Protein Characteristic Table for KIAA0225

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06210
Accession No. :	D86978
Description :	Nuclear pore complex protein Nup205.
HUGO Gene Name :	nucleoporin 205kDa (NUP205)
Clone Name :	ha02515 [Vector Info]
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 6237 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 193 bp

Genome contig ID gi89161213f_134806392
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
CTCACTAGTAAAAAATAAATACTTTTTAAAAAAAC
Flanking genome sequence
(177647 - 177696)
----+----*----+----*----+----*----+----*----+----*
AAAACAAATGTATGGTTAATCTTTTGATCTTTTATCTTTTGATCAGCATT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 f 134893228 134984037 43 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 2013 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q92621	100.0	Nuclear pore co...	Homo sapiens
EAW83856	99.9	nucleoporin 205...	Homo sapiens
XP_527899	99.7	nucleoporin 205...	Pan troglodytes
XP_001105911	99.3	nucleoporin 205...	Macaca mulatta
XP_532728	96.7	similar to Nucl...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 265 LDAVNLALLMALLYCFDISFIE 286 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	265	LDAVNLALLMALLYCFDISFIE	286	PRIMARY	22

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: CCGTGCTTATGCTCTTCTATG
Primer_r	: TGAGGATGGAACTAGGGGAAG
PCR product length	: 158 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	193 bp
Genome contig ID	gi89161213f_134806392
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- CTCACTAGTAAAAAATAAATACTTTTTAAAAAAAC
Flanking genome sequence (177647 - 177696)	----+--------+--------+--------+--------+----* AAAACAAATGTATGGTTAATCTTTTGATCTTTTATCTTTTGATCAGCATT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	f	134893228	134984037	43	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0225

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information