hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20573524/chunk_1/iprscan-20080501-20573524.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0230 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00408 276.1 2.7e-78 4 SM00409 228.7 4.9e-64 4 SM00369 128.2 9e-34 5 SM00214 73.6 2.5e-17 1 SM00082 31.4 0.00012 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00369 1/5 82 101 .. 1 24 [] 7.7 48 SM00369 2/5 102 125 .. 1 24 [] 31.4 0.00012 SM00369 3/5 126 149 .. 1 24 [] 24.3 0.017 SM00369 4/5 150 173 .. 1 24 [] 32.0 8e-05 SM00369 5/5 174 197 .. 1 24 [] 32.8 4.6e-05 SM00082 1/1 209 261 .. 1 55 [] 31.4 0.00012 SM00409 1/4 269 353 .. 1 58 [] 50.3 2.6e-10 SM00408 1/4 275 341 .. 1 56 [] 66.2 4e-15 SM00409 2/4 365 447 .. 1 58 [] 65.4 7.2e-15 SM00408 2/4 371 436 .. 1 56 [] 67.6 1.5e-15 SM00409 3/4 456 537 .. 1 58 [] 55.0 9.7e-12 SM00408 3/4 462 526 .. 1 56 [] 73.4 2.7e-17 SM00409 4/4 548 629 .. 1 58 [] 58.1 1.1e-12 SM00408 4/4 554 618 .. 1 56 [] 68.8 6.9e-16 SM00214 1/1 1432 1487 .. 1 75 [] 73.6 2.5e-17 Alignments of top-scoring domains: SM00369: domain 1 of 5, from 82 to 101: score 7.7, E = 48 *->LpnLreLdLsnNqLtsLPpgaFqg<-* LdL +N+++++ pgaF+ KIAA0230 82 ----SILDLRFNRIREIQPGAFRR 101 SM00369: domain 2 of 5, from 102 to 125: score 31.4, E = 0.00012 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL +L L+nNq++++P+gaF++ KIAA0230 102 LRNLNTLLLNNNQIKRIPSGAFED 125 SM00369: domain 3 of 5, from 126 to 149: score 24.3, E = 0.017 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L+L N ++s+ ++aF g KIAA0230 126 LENLKYLYLYKNEIQSIDRQAFKG 149 SM00369: domain 4 of 5, from 150 to 173: score 32.0, E = 8e-05 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L+ L+L++Nq+++L p+ Fq+ KIAA0230 150 LASLEQLYLHFNQIETLDPDSFQH 173 SM00369: domain 5 of 5, from 174 to 197: score 32.8, E = 4.6e-05 *->LpnLreLdLsnNqLtsLPpgaFqg<-* Lp+L++L L+nN++t+L pg+F++ KIAA0230 174 LPKLERLFLHNNRITHLVPGTFNH 197 SM00082: domain 1 of 1, from 209 to 261: score 31.4, E = 0.00012 *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll N ++CDCe++wL+++l+ e + ++ ++ C++P + +G +++ KIAA0230 209 NTLHCDCEILWLADLLKT-YAESGNAQA-AAICEYPRRIQGRSVATI 253 lpsefsCp<-* +p e C+ KIAA0230 254 TPEELNCE 261 SM00409: domain 1 of 4, from 269 to 353: score 50.3, E = 2.6e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++ v G +v +tC+a+++++++i W+++++ + +++++ + + KIAA0230 269 PQdADVTSGNTVYFTCrAEgnpkpEIIWLrnnnelsmktdsrlnlld 315 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++L I+n ++ D+ G+Y+C+a++ +g+++ q++tL+ + KIAA0230 316 dgtLMIqNTQETDQ---GIYQCMAKnvAGEVKT-QEVTLRYF 353 SM00408: domain 1 of 4, from 275 to 341: score 66.2, E = 4e-15 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti +G++V +tC+a+g+p p+I Wl+++ +l+ +++++ + +++tL i KIAA0230 275 TSGNTVYFTCRAEGNPKPEIIWLRnNNELSmktdsrlnllDDGTLMI 321 knvsleDsGlYtCvArNsvg<-* +n ++ D G+Y+C A N +g KIAA0230 322 QNTQETDQGIYQCMAKNVAG 341 SM00409: domain 2 of 4, from 365 to 447: score 65.4, E = 7.2e-15 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++++v +GesvtL+C+a+++++++i+W+++++++ + +++ + +++ KIAA0230 365 PQnTEVLVGESVTLECsATghpppRISWTrgdrtplpvdprvnitps 411 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L I+nv Ds G+Y C at++ s+++ ++ ++V+ KIAA0230 412 ggLYIqNVVQGDS---GEYACSATnnIDSVHA--TAFIIVQ 447 SM00408: domain 2 of 4, from 371 to 436: score 67.6, E = 1.5e-15 *->leGqsVtLtCpasgdpvpnItWlk..gkplp........sgstLtik l G+sVtL+C a+g p p I+W++++ +plp +++ + + ++ L i+ KIAA0230 371 LVGESVTLECSATGHPPPRISWTRgdRTPLPvdprvnitPSGGLYIQ 417 nvsleDsGlYtCvArNsvg<-* nv +DsG+Y+C+A+N++ KIAA0230 418 NVVQGDSGEYACSATNNID 436 SM00409: domain 3 of 4, from 456 to 537: score 55.0, E = 9.7e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++ +v eG++v ++C+a++++++ i W++++++ + ++++ +++ KIAA0230 456 PQdRVVIEGQTVDFQCeAKgnpppVIAWTkggsqlsvdrrhlvlssg 502 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L+I++v + D+ G Y C+a + gs++ ++LtV+ KIAA0230 503 tLRIsGVALHDQ---GQYECQAVniIGSQKV--VAHLTVQ 537 SM00408: domain 3 of 4, from 462 to 526: score 73.4, E = 2.7e-17 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +eGq+V ++C+a g+p p I W+k+g++l+ ++++ s++tL+i+ KIAA0230 462 IEGQTVDFQCEAKGNPPPVIAWTKgGSQLSvdrrhlvlSSGTLRISG 508 vsleDsGlYtCvArNsvg<-* v+l D G Y+C+A N +g KIAA0230 509 VALHDQGQYECQAVNIIG 526 SM00409: domain 4 of 4, from 548 to 629: score 58.1, E = 1.1e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++tv +G +v+L+C+ ++ + + itW +++ + + +++ + ++ + KIAA0230 548 PSdTTVEVGANVQLPCsSQgepepAITWNkdgvqvtesgkfhispeg 594 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* LtI++v p+D+ G Y C+a+++ gsas + L+V KIAA0230 595 fLTInDVGPADA---GRYECVARntIGSASV--SMVLSVN 629 SM00408: domain 4 of 4, from 554 to 618: score 68.8, E = 6.9e-16 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn + G +V+L+C g p+p ItW k+g ++ ++++ + + +++Lti + KIAA0230 554 EVGANVQLPCSSQGEPEPAITWNKdGVQVTesgkfhisPEGFLTIND 600 vsleDsGlYtCvArNsvg<-* v ++D+G+Y+CvArN +g KIAA0230 601 VGPADAGRYECVARNTIG 618 SM00214: domain 1 of 1, from 1432 to 1487: score 73.6, E = 2.5e-17 *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc Cv+++Ge+++++++Wk d +C+iC C+dg +v+C+ +Cpp+ KIAA0230 1432 CVDAGGESHANNTKWKKD-ACTICECKDG-QVTCFVEACPPA----- 1471 kdsdCpnperlpavaekppGeCCpeyrC<-* +C+ p ++ pG CCp +C KIAA0230 1472 ---TCAVP-------VNIPGACCP--VC 1487 //