hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21060701/chunk_1/iprscan-20080501-21060701.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0235 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00806.9.ls Pumilio-family RNA binding repeat 310.4 3e-90 8 PF00806.9.fs Pumilio-family RNA binding repeat 294.4 3.1e-87 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00806.9.fs 1/8 726 760 .. 1 35 [] 37.8 1.8e-10 PF00806.9.ls 1/8 726 760 .. 1 35 [] 39.8 8.7e-09 PF00806.9.ls 2/8 762 796 .. 1 35 [] 33.9 5.3e-07 PF00806.9.fs 2/8 762 796 .. 1 35 [] 31.9 1.1e-08 PF00806.9.ls 3/8 798 832 .. 1 35 [] 32.9 1e-06 PF00806.9.fs 3/8 798 832 .. 1 35 [] 30.9 2.1e-08 PF00806.9.ls 4/8 834 868 .. 1 35 [] 42.3 1.6e-09 PF00806.9.fs 4/8 834 868 .. 1 35 [] 40.3 3.2e-11 PF00806.9.ls 5/8 870 904 .. 1 35 [] 48.2 2.6e-11 PF00806.9.fs 5/8 870 904 .. 1 35 [] 46.2 5.5e-13 PF00806.9.ls 6/8 906 940 .. 1 35 [] 47.2 5.2e-11 PF00806.9.fs 6/8 906 940 .. 1 35 [] 45.2 1.1e-12 PF00806.9.ls 7/8 942 976 .. 1 35 [] 29.2 1.4e-05 PF00806.9.fs 7/8 942 976 .. 1 35 [] 27.2 2.7e-07 PF00806.9.ls 8/8 985 1019 .. 1 35 [] 37.1 5.8e-08 PF00806.9.fs 8/8 985 1019 .. 1 35 [] 35.1 1.2e-09 Alignments of top-scoring domains: PF00806.9.fs: domain 1 of 8, from 726 to 760: score 37.8, E = 1.8e-10 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* ++g++v+ s+dq+G++++Q+ le+atp ++q ++ KIAA0235 726 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVF 760 PF00806.9.ls: domain 1 of 8, from 726 to 760: score 39.8, E = 8.7e-09 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* ++g++v+ s+dq+G++++Q+ le+atp ++q ++ KIAA0235 726 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVF 760 PF00806.9.ls: domain 2 of 8, from 762 to 796: score 33.9, E = 5.3e-07 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i++ +qL+td +Gnyv+Qk++e+++ q+ + KIAA0235 762 EILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALA 796 PF00806.9.fs: domain 2 of 8, from 762 to 796: score 31.9, E = 1.1e-08 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i++ +qL+td +Gnyv+Qk++e+++ q+ + KIAA0235 762 EILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALA 796 PF00806.9.ls: domain 3 of 8, from 798 to 832: score 32.9, E = 1e-06 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* i+g+++ L+++ yG++v+Qk le ++ q++ ++ KIAA0235 798 RIRGHVLPLALQMYGCRVIQKALESISSDQQSEMV 832 PF00806.9.fs: domain 3 of 8, from 798 to 832: score 30.9, E = 2.1e-08 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* i+g+++ L+++ yG++v+Qk le ++ q++ ++ KIAA0235 798 RIRGHVLPLALQMYGCRVIQKALESISSDQQSEMV 832 PF00806.9.ls: domain 4 of 8, from 834 to 868: score 42.3, E = 1.6e-09 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +++g+++++++dq+Gn+v+Qk++e+ p+ +q+i+ KIAA0235 834 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII 868 PF00806.9.fs: domain 4 of 8, from 834 to 868: score 40.3, E = 3.2e-11 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +++g+++++++dq+Gn+v+Qk++e+ p+ +q+i+ KIAA0235 834 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII 868 PF00806.9.ls: domain 5 of 8, from 870 to 904: score 48.2, E = 2.6e-11 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +kg++ +Lst++yG++v+Q++le++t eq+ +il KIAA0235 870 AFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPIL 904 PF00806.9.fs: domain 5 of 8, from 870 to 904: score 46.2, E = 5.5e-13 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +kg++ +Lst++yG++v+Q++le++t eq+ +il KIAA0235 870 AFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPIL 904 PF00806.9.ls: domain 6 of 8, from 906 to 940: score 47.2, E = 5.2e-11 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* ++ ++ +qL++dqyGnyv+Q++le++ pe++++i+ KIAA0235 906 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 940 PF00806.9.fs: domain 6 of 8, from 906 to 940: score 45.2, E = 1.1e-12 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* ++ ++ +qL++dqyGnyv+Q++le++ pe++++i+ KIAA0235 906 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 940 PF00806.9.ls: domain 7 of 8, from 942 to 976: score 29.2, E = 1.4e-05 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i+g+++ Ls+++++++v++k+ ++a+ ++ l++ KIAA0235 942 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLI 976 PF00806.9.fs: domain 7 of 8, from 942 to 976: score 27.2, E = 2.7e-07 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i+g+++ Ls+++++++v++k+ ++a+ ++ l++ KIAA0235 942 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLI 976 PF00806.9.ls: domain 8 of 8, from 985 to 1019: score 37.1, E = 5.8e-08 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* + l+++++dqy+nyv+Qk++++a p q++ i+ KIAA0235 985 GPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 1019 PF00806.9.fs: domain 8 of 8, from 985 to 1019: score 35.1, E = 1.2e-09 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* + l+++++dqy+nyv+Qk++++a p q++ i+ KIAA0235 985 GPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 1019 //