HUGE

Gene/Protein Characteristic Table for KIAA0238

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00473
Accession No. :	D87075
Description :	Solute carrier family 23 member 2.
HUGO Gene Name :	solute carrier family 23 (nucleobase transporters), member 2 (SLC23A2)
Clone Name :	fg04858 [Vector Info]
Flexi ORF Clone :	pF1KSDA0238
Source :	Human fetal brain
Note :	We replaced ha02544, former representative clones for KIAA0238 with fg04858. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6941 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 4613 bp

Genome contig ID gi51511747r_4681005
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
AACTGTTCCGTACAAATAAAAGCTCTCCTGGACAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTTTTGCTCTTCACGTGCCTCCTTCTTGGGCTACTCTTTAAGAAAAGAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 20 r 4781005 4930145 17 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 676 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9UGH3	100.0	Solute carrier ...	Homo sapiens
EAX10438	99.8	solute carrier ...	Homo sapiens
ABK34450	99.8	sodium-ascorbic...	Homo sapiens
AAC78806	99.8	yolk sac permea...	Homo sapiens
XP_001164748	100.0	solute carrier ...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR006043 126 562 PF00860 Xanthine/uracil/vitamin C permease

ScanRegExp IPR006042 508 528 PS01116 Xanthine/uracil permease

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006043	126	562	PF00860	Xanthine/uracil/vitamin C permease
ScanRegExp	IPR006042	508	528	PS01116	Xanthine/uracil permease

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 140 FSGTIAVPFLLADAMCVGYDQWA 162 SECONDARY 23

2 164 SQLIGTIFFCVGITTLLQTTFGC 186 SECONDARY 23

3 240 EIQGAIIMSSLIEVVIGLLGLPG 262 PRIMARY 23

4 267 YIGPLTITPTVALIGLSGFQAAG 289 SECONDARY 23

5 292 AGKHWGIAMLTIFLVLLFSQYAR 314 PRIMARY 23

6 336 LFKMFPIILAILVSWLLCFIFTV 358 PRIMARY 23

7 398 LPTVSAAGVIGMLSAVVASIIES 420 PRIMARY 23

8 484 VIQCGAALMLALGMIGKFSALFA 506 PRIMARY 23

9 512 VLGALFCTLFGMITAVGLSNLQF 534 SECONDARY 23

10 540 SRNLFVLGFSIFFGLVLPSYLRQ 562 SECONDARY 23

11 571 GIDQVLNVLLTTAMFVGGCVAFI 593 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	140	FSGTIAVPFLLADAMCVGYDQWA	162	SECONDARY	23
2	164	SQLIGTIFFCVGITTLLQTTFGC	186	SECONDARY	23
3	240	EIQGAIIMSSLIEVVIGLLGLPG	262	PRIMARY	23
4	267	YIGPLTITPTVALIGLSGFQAAG	289	SECONDARY	23
5	292	AGKHWGIAMLTIFLVLLFSQYAR	314	PRIMARY	23
6	336	LFKMFPIILAILVSWLLCFIFTV	358	PRIMARY	23
7	398	LPTVSAAGVIGMLSAVVASIIES	420	PRIMARY	23
8	484	VIQCGAALMLALGMIGKFSALFA	506	PRIMARY	23
9	512	VLGALFCTLFGMITAVGLSNLQF	534	SECONDARY	23
10	540	SRNLFVLGFSIFFGLVLPSYLRQ	562	SECONDARY	23
11	571	GIDQVLNVLLTTAMFVGGCVAFI	593	SECONDARY	23

Expression profile	Description

: Northern blot Description
: RT-PCR-ELISA Description

Northern blot	Description

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: ACGTTGCCATCTTACTGACAG
Primer_r	: AACAACCCCACCCCAAATACC
PCR product length	: 223 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	4613 bp
Genome contig ID	gi51511747r_4681005
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- AACTGTTCCGTACAAATAAAAGCTCTCCTGGACAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGTTTTGCTCTTCACGTGCCTCCTTCTTGGGCTACTCTTTAAGAAAAGAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	20	r	4781005	4930145	17	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0238

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information