hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21111475/chunk_1/iprscan-20080501-21111475.nocrc
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Query sequence: KIAA0238
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00860.11.ls   Permease family                         326.4    4.7e-95   1
PF00860.11.fs   Permease family                         324.7    1.5e-94   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00860.11.ls     1/1     126   562 ..     1   443 []   326.4  4.7e-95
PF00860.11.fs     1/1     129   562 ..     1   443 []   324.7  1.5e-94

Alignments of top-scoring domains:
PF00860.11.ls: domain 1 of 1, from 126 to 562: score 326.4, E = 4.7e-95
                   *->gqllllGLQhllamfaativVPllvgdalClglsaeslaqlisatll
                         ++lGLQh l++f++ti VP l++da+C g     ++qli + ++
    KIAA0238   126    YLCIFLGLQHYLTCFSGTIAVPFLLADAMCVGYDQWATSQLIGTIFF 172  

                   asGigTllQllayGigrifGirlPiylGsSFafvtPlialgalmiaiGsa
                   + Gi TllQ++       fG rlP +++s+Faf +P  a+ +l +  +++
    KIAA0238   173 CVGITTLLQTT-------FGCRLPLFQASAFAFLAPARAILSLDKWKCNT 215  

                   grgqgvled...........igialaglfgallvagvlftlisltglrgr
                   +  ++  ++++ +  ++++ ++  +++++ga++ ++++ ++i+l+gl+g 
    KIAA0238   216 T--DVSVANgtaellhtehiWYPRIREIQGAIIMSSLIEVVIGLLGLPGA 263  

                   LarlfPPvVtgpvvllIGLsLapiavkgagggwaaigdgllTllvgsldl
                   L ++++P+++ p v lIGLs  + a   ag +w   g ++lT ++ +l++
    KIAA0238   264 LLKYIGPLTITPTVALIGLSGFQAAGERAGKHW---GIAMLT-IFLVLLF 309  

                   llla..vvvlavilllsvfth..ilkgffrqipiLiGiiaGwllalfmGp
                     +a++v  ++ i   ++  ++ +  ++f+++pi ++i++ wll+++++ 
    KIAA0238   310 SQYArnVKFPLPIYKSKKG-WtaYKLQLFKMFPIILAILVSWLLCFIFT- 357  

                   Sivnl.....speGseARtDkN.SLavvsdapwfqlpspfkfgtPldalg
                    +++  +++++++G  ARtD  + + +v  apwf +p+pf++g+P     
    KIAA0238   358 -VTDVfppdsTKYGFYARTDARqGVLLV--APWFKVPYPFQWGLPT---- 400  

                   afnpgliltvlavalvaivEstGdiravakvvgrdlkppqykpdlrRgll
                     +++ ++ +l++++++i+Es+Gd++a+a+++  +++p   +++++Rg++
    KIAA0238   401 -VSAAGVIGMLSAVVASIIESIGDYYACARLSCAPPPP---IHAINRGIF 446  

                   adGlatllsGlfGaGfPtTtyaeNiGvvalTkVySrrvgvtAgVilillG
                   ++Gl+++l G fG+G + T+ ++NiGv+ +TkV Srrv+++++ + ++lG
    KIAA0238   447 VEGLSCVLDGIFGTGNGSTSSSPNIGVLGITKVGSRRVIQCGAALMLALG 496  

                   lipkfaaLfssIPspVlGGvmlvmfGmiaasGvsilsrvdldysarNllI
                   +i+kf+aLf+s+P+pVlG+    +fGmi a+G+s+l+++dl+ s+rNl++
    KIAA0238   497 MIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLN-SSRNLFV 545  

                   iavslvlGlgistvpei<-*
                    ++s+++Gl ++ + +    
    KIAA0238   546 LGFSIFFGLVLPSYLRQ    562  

PF00860.11.fs: domain 1 of 1, from 129 to 562: score 324.7, E = 1.5e-94
                   *->gqllllGLQhllamfaativVPllvgdalClglsaeslaqlisatll
                         ++lGLQh l++f++ti VP l++da+C g     ++qli + ++
    KIAA0238   129    ---IFLGLQHYLTCFSGTIAVPFLLADAMCVGYDQWATSQLIGTIFF 172  

                   asGigTllQllayGigrifGirlPiylGsSFafvtPlialgalmiaiGsa
                   + Gi TllQ++       fG rlP +++s+Faf +P  a+ +l +  +++
    KIAA0238   173 CVGITTLLQTT-------FGCRLPLFQASAFAFLAPARAILSLDKWKCNT 215  

                   grgqgvled...........igialaglfgallvagvlftlisltglrgr
                   +  ++  ++++ +  ++++ ++  +++++ga++ ++++ ++i+l+gl+g 
    KIAA0238   216 T--DVSVANgtaellhtehiWYPRIREIQGAIIMSSLIEVVIGLLGLPGA 263  

                   LarlfPPvVtgpvvllIGLsLapiavkgagggwaaigdgllTllvgsldl
                   L ++++P+++ p v lIGLs  + a   ag +w   g ++lT ++ +l++
    KIAA0238   264 LLKYIGPLTITPTVALIGLSGFQAAGERAGKHW---GIAMLT-IFLVLLF 309  

                   llla..vvvlavilllsvfth..ilkgffrqipiLiGiiaGwllalfmGp
                     +a++v  ++ i   ++  ++ +  ++f+++pi ++i++ wll+++++ 
    KIAA0238   310 SQYArnVKFPLPIYKSKKG-WtaYKLQLFKMFPIILAILVSWLLCFIFT- 357  

                   Sivnl.....speGseARtDkN.SLavvsdapwfqlpspfkfgtPldalg
                    +++  +++++++G  ARtD  + + +v  apwf +p+pf++g+P     
    KIAA0238   358 -VTDVfppdsTKYGFYARTDARqGVLLV--APWFKVPYPFQWGLPT---- 400  

                   afnpgliltvlavalvaivEstGdiravakvvgrdlkppqykpdlrRgll
                     +++ ++ +l++++++i+Es+Gd++a+a+++  +++p   +++++Rg++
    KIAA0238   401 -VSAAGVIGMLSAVVASIIESIGDYYACARLSCAPPPP---IHAINRGIF 446  

                   adGlatllsGlfGaGfPtTtyaeNiGvvalTkVySrrvgvtAgVilillG
                   ++Gl+++l G fG+G + T+ ++NiGv+ +TkV Srrv+++++ + ++lG
    KIAA0238   447 VEGLSCVLDGIFGTGNGSTSSSPNIGVLGITKVGSRRVIQCGAALMLALG 496  

                   lipkfaaLfssIPspVlGGvmlvmfGmiaasGvsilsrvdldysarNllI
                   +i+kf+aLf+s+P+pVlG+    +fGmi a+G+s+l+++dl+ s+rNl++
    KIAA0238   497 MIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLN-SSRNLFV 545  

                   iavslvlGlgistvpei<-*
                    ++s+++Gl ++ + +    
    KIAA0238   546 LGFSIFFGLVLPSYLRQ    562  

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