hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21174518/chunk_1/iprscan-20080501-21174518.nocrc
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Query sequence: KIAA0242
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00789.11.ls UBX domain                                     112.0    1.7e-30   1
PF00789.11.fs UBX domain                                     110.1    1.8e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00789.11.fs   1/1     335   416 ..     1    92 []   110.1  1.8e-30
PF00789.11.ls   1/1     335   416 ..     1    92 []   112.0  1.7e-30

Alignments of top-scoring domains:
PF00789.11.fs: domain 1 of 1, from 335 to 416: score 110.1, E = 1.8e-30
                   *->skaedvcrlqiRlPDGsrlvrrFnssdklqdvydfVdsnrddadepe
                      ++++ v+r+q+RlPDGs+++++F+s+++l++ ++f + + +++++ +
    KIAA0242   335    RERSTVARIQFRLPDGSSFTNQFPSDAPLEEARQF-AAQTVGNTYGN 380  

                   VyPdYHdyeFsLltnfPRrlltdddesktLkeagllpnstlvlep<-*
                            FsL+t+fPRr++t++d++k+L++++l p++++vl p   
    KIAA0242   381 ---------FSLATMFPRREFTKEDYKKKLLDLELAPSASVVLLP    416  

PF00789.11.ls: domain 1 of 1, from 335 to 416: score 112.0, E = 1.7e-30
                   *->skaedvcrlqiRlPDGsrlvrrFnssdklqdvydfVdsnrddadepe
                      ++++ v+r+q+RlPDGs+++++F+s+++l++ ++f + + +++++ +
    KIAA0242   335    RERSTVARIQFRLPDGSSFTNQFPSDAPLEEARQF-AAQTVGNTYGN 380  

                   VyPdYHdyeFsLltnfPRrlltdddesktLkeagllpnstlvlep<-*
                            FsL+t+fPRr++t++d++k+L++++l p++++vl p   
    KIAA0242   381 ---------FSLATMFPRREFTKEDYKKKLLDLELAPSASVVLLP    416  

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