HUGE

Gene/Protein Characteristic Table for KIAA0247

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00041
Accession No. :	D87434
Description :
HUGO Gene Name :
Clone Name :	ha07001 [Vector Info]
Flexi ORF Clone :	pF1KA0247
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 5338 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4158 bp

Genome contig ID gi51511730f_69048111
PolyA signal sequence
(ATTAAA,-20)
+----*----+----*----+----*----+----
CTGCATTTCTAAATAATTAAAAAAAAGTTCTTATG
Flanking genome sequence
(203498 - 203547)
----+----*----+----*----+----*----+----*----+----*
AAGGCAATTCTGGGAGATGTGATCCTTCCTGAAAGTTTTTGCAGAAACCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 f 69148111 69251607 6 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 304 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001109433	8.9e-121	98.3	hypothetical pr...	Macaca mulatta
AAH40401	2.9e-109	89.1	RIKEN cDNA 4933...	Mus musculus
BAE37934	1.1e-108	88.8	unnamed protein...	Mus musculus
BAE30815	2.3e-108	88.8	unnamed protein...	Mus musculus
EDL02683	4.2e-108	88.8	RIKEN cDNA 4933...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000436 43 103 PF00084 Sushi/SCR/CCP

HMMSmart IPR000436 43 103 SM00032 Sushi/SCR/CCP

ProfileScan IPR000436 41 105 PS50923 Sushi/SCR/CCP

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000436	43	103	PF00084	Sushi/SCR/CCP
HMMSmart	IPR000436	43	103	SM00032	Sushi/SCR/CCP
ProfileScan	IPR000436	41	105	PS50923	Sushi/SCR/CCP

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 17 VASVGHGVFLPLVILCTLLGDGL 39 SECONDARY 23

2 120 LSIVASTASSVALILLLVVLFVL 142 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	17	VASVGHGVFLPLVILCTLLGDGL	39	SECONDARY	23
2	120	LSIVASTASSVALILLLVVLFVL	142	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: TAATTGACTCTGTGCAGGATG
Primer_r	: TACTATCTTCACACCCACTGC
PCR product length	: 108 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4158 bp
Genome contig ID	gi51511730f_69048111
PolyA signal sequence (ATTAAA,-20)	+--------+--------+----*----+---- CTGCATTTCTAAATAATTAAAAAAAAGTTCTTATG
Flanking genome sequence (203498 - 203547)	----+--------+--------+--------+--------+----* AAGGCAATTCTGGGAGATGTGATCCTTCCTGAAAGTTTTTGCAGAAACCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	f	69148111	69251607	6	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0247

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information