hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21301919/chunk_1/iprscan-20080501-21301919.nocrc
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Query sequence: KIAA0248
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00222                                                 334.4    7.3e-96   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00222    1/1     717   905 ..     1   226 []   334.4  7.3e-96

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 717 to 905: score 334.4, E = 7.3e-96
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      +kn+kkll+ g+++fnqkPkkGiqfLqekg+l ++  ++ +evA++l
    KIAA0248   717    IKNKKKLLITGTEQFNQKPKKGIQFLQEKGLLTIP--MDNTEVAQWL 761  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   +          e+++l+kk+iG+++    d++n+++L++fv++f+F+g++
    KIAA0248   762 R----------ENPRLDKKMIGEFVS---DRKNIDLLESFVSTFSFQGLR 798  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ldeALR +Le frLPGEa  I+RlleaF er+++cN ++f+         
    KIAA0248   799 LDEALRLYLEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFA--------- 839  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       n Da+++LaY++IMLNTD+Hn+nv+k++a     +Mt+e+F+kNl+
    KIAA0248   840 ----NSDACFSLAYAVIMLNTDQHNHNVRKQNA-----PMTLEEFRKNLK 880  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g+n    +g+d+ ++ Le++Y++Ikn+ei   
    KIAA0248   881 GVN----GGKDFEQDILEDMYHAIKNEEI    905  

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