hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21402118/chunk_1/iprscan-20080501-21402118.nocrc
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Query sequence: KIAA0254
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02194.6.ls PXA domain                                     340.0    3.7e-99   1
PF02194.6.fs PXA domain                                     338.1    1.4e-98   1
PF08628.2.ls Sorting nexin C terminal                       145.0    1.9e-40   1
PF08628.2.fs Sorting nexin C terminal                       143.1    6.7e-40   1
PF00787.14.fs PX domain                                       98.4    1.6e-29   1
PF00787.14.ls PX domain                                      100.2    5.8e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02194.6.fs   1/1     112   289 ..     1   204 []   338.1  1.4e-98
PF02194.6.ls   1/1     112   289 ..     1   204 []   340.0  3.7e-99
PF00787.14.ls   1/1     544   676 ..     1   131 []   100.2  5.8e-27
PF00787.14.fs   1/1     544   676 ..     1   131 []    98.4  1.6e-29
PF08628.2.fs   1/1     855   964 ..     1   128 []   143.1  6.7e-40
PF08628.2.ls   1/1     855   964 ..     1   128 []   145.0  1.9e-40

Alignments of top-scoring domains:
PF02194.6.fs: domain 1 of 1, from 112 to 289: score 338.1, E = 1.4e-98
                   *->eaqLekeLnsiIskilrdYVqsWYkKisvSeDasFlkeieqtlksil
                      e+qLe+e+n++I++i+rd+V+sWY+  svS++++F++e+e+++k+++
    KIAA0254   112    ERQLEREINRTIQMIIRDFVLSWYR--SVSQEPAFEEEMEAAMKGLV 156  

                   lelkkrlskqDsaslivlklyeilkklistiedakEAvlrkaspqekite
                   +el++r+s++Ds+++++++l++++++l+s+i+ akEA+++k++p+e++++
    KIAA0254   157 QELRRRMSVMDSHAVAQSVLTLCGCHLQSYIQ-AKEATAGKNGPVEPSHL 205  

                   idlqyketaedNYKphkaLekkenEltKEvCRDLvCtsPKDEEkylRklv
                   +++++++ta     ph+a++++++E+t                 y+R++v
    KIAA0254   206 WEAYCRATA-----PHPAVHSPSAEVT-----------------YTRGVV 233  

                   elLLkfLlPedelesklvGrvllrEvLAtvvilplIsklSdPdfinlvii
                   +lLL++L+P+++le+++ Gr++++E+++++vilplIs+lSdPd+i+lv++
    KIAA0254   234 NLLLQGLVPKPHLETRT-GRHVVVELITCNVILPLISRLSDPDWIHLVLV 282  

                   llfskse<-*
                   ++fsk++   
    KIAA0254   283 GIFSKAR    289  

PF02194.6.ls: domain 1 of 1, from 112 to 289: score 340.0, E = 3.7e-99
                   *->eaqLekeLnsiIskilrdYVqsWYkKisvSeDasFlkeieqtlksil
                      e+qLe+e+n++I++i+rd+V+sWY+  svS++++F++e+e+++k+++
    KIAA0254   112    ERQLEREINRTIQMIIRDFVLSWYR--SVSQEPAFEEEMEAAMKGLV 156  

                   lelkkrlskqDsaslivlklyeilkklistiedakEAvlrkaspqekite
                   +el++r+s++Ds+++++++l++++++l+s+i+ akEA+++k++p+e++++
    KIAA0254   157 QELRRRMSVMDSHAVAQSVLTLCGCHLQSYIQ-AKEATAGKNGPVEPSHL 205  

                   idlqyketaedNYKphkaLekkenEltKEvCRDLvCtsPKDEEkylRklv
                   +++++++ta     ph+a++++++E+t                 y+R++v
    KIAA0254   206 WEAYCRATA-----PHPAVHSPSAEVT-----------------YTRGVV 233  

                   elLLkfLlPedelesklvGrvllrEvLAtvvilplIsklSdPdfinlvii
                   +lLL++L+P+++le+++ Gr++++E+++++vilplIs+lSdPd+i+lv++
    KIAA0254   234 NLLLQGLVPKPHLETRT-GRHVVVELITCNVILPLISRLSDPDWIHLVLV 282  

                   llfskse<-*
                   ++fsk++   
    KIAA0254   283 GIFSKAR    289  

PF00787.14.ls: domain 1 of 1, from 544 to 676: score 100.2, E = 5.8e-27
                   *->dpili.vvvvdpetsrkkegdkkhtyyvyevttktn...........
                      ++i+++ ++++ +t r++ g++ h+y++y+v+++t  +++++++ ++
    KIAA0254   544    PVIIQnLRITGTITAREHSGTGFHPYTLYTVKYETAldgenssglqq 590  

                   .kewsVkRRYsdFeeLhekLlrkfp...........grilPplPpKklfg
                     +++V RRY++F++L+++L++k   ++  ++ +++++ +P lP  +   
    KIAA0254   591 lAYHTVNRRYREFLNLQTRLEEKPDlrkfiknvkgpKKLFPDLPFGN--- 637  

                   ryrkeslpmtsvwhssnnfdeefiekRrkgLeeyLqrllqhPelsnesev
                                     +d++ +e R+  Le++L++l+ +Pe++n se+
    KIAA0254   638 ------------------MDSDRVEARKSLLESFLKQLCAIPEIAN-SEE 668  

                   vleFLesd<-*
                   v+eFL  +   
    KIAA0254   669 VQEFLALN    676  

PF00787.14.fs: domain 1 of 1, from 544 to 676: score 98.4, E = 1.6e-29
                   *->dpili.vvvvdpetsrkkegdkkhtyyvyevttktn...........
                      ++i+++ ++++ +t r++ g++ h+y++y+v+++t  +++++++ ++
    KIAA0254   544    PVIIQnLRITGTITAREHSGTGFHPYTLYTVKYETAldgenssglqq 590  

                   .kewsVkRRYsdFeeLhekLlrkfp...........grilPplPpKklfg
                     +++V RRY++F++L+++L++k   ++  ++ +++++ +P lP  +   
    KIAA0254   591 lAYHTVNRRYREFLNLQTRLEEKPDlrkfiknvkgpKKLFPDLPFGN--- 637  

                   ryrkeslpmtsvwhssnnfdeefiekRrkgLeeyLqrllqhPelsnesev
                                     +d++ +e R+  Le++L++l+ +Pe++n se+
    KIAA0254   638 ------------------MDSDRVEARKSLLESFLKQLCAIPEIAN-SEE 668  

                   vleFLesd<-*
                   v+eFL  +   
    KIAA0254   669 VQEFLALN    676  

PF08628.2.fs: domain 1 of 1, from 855 to 964: score 143.1, E = 6.7e-40
                   *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy
                      WL++++++++l+      +G   + ++++++++v+ +lts++r+v+y
    KIAA0254   855    WLCTENMQKFLR----LIFG---TLVQRWLEVQVA-NLTSPQRWVQY 893  

                   lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr
                   l+ll++s+W     PgG +L++ p+p  R++e+k++ +k+A+  q+L + 
    KIAA0254   894 LRLLQESIW-----PGG-VLPKFPRP-VRTQEQKLAAEKQAL--QSL-MG 933  

                   llPdalgkvvGrenareairriFdmLQnprL<-*
                    lPd+++ ++G +++r +++++ ++LQ+p++   
    KIAA0254   934 VLPDLVVEILGVNKCRLSWGLVLESLQQPLI    964  

PF08628.2.ls: domain 1 of 1, from 855 to 964: score 145.0, E = 1.9e-40
                   *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy
                      WL++++++++l+      +G   + ++++++++v+ +lts++r+v+y
    KIAA0254   855    WLCTENMQKFLR----LIFG---TLVQRWLEVQVA-NLTSPQRWVQY 893  

                   lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr
                   l+ll++s+W     PgG +L++ p+p  R++e+k++ +k+A+  q+L + 
    KIAA0254   894 LRLLQESIW-----PGG-VLPKFPRP-VRTQEQKLAAEKQAL--QSL-MG 933  

                   llPdalgkvvGrenareairriFdmLQnprL<-*
                    lPd+++ ++G +++r +++++ ++LQ+p++   
    KIAA0254   934 VLPDLVVEILGVNKCRLSWGLVLESLQQPLI    964  

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