hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21402118/chunk_1/iprscan-20080501-21402118.nocrc
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Query sequence: KIAA0254
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00313                                                 318.1    6.2e-91   1
SM00312                                                  99.9    2.9e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00313    1/1     112   289 ..     1   226 []   318.1  6.2e-91
SM00312    1/1     544   676 ..     1   142 []    99.9  2.9e-25

Alignments of top-scoring domains:
SM00313: domain 1 of 1, from 112 to 289: score 318.1, E = 6.2e-91
                   *->paqLeeeLesiIskIirdYVqsWYkkisvSeDasFlkeirqtlkyil
                      ++qLe+e++++I++Iird+V+sWY+  svS++++F++e+++++k+++
    KIAA0254   112    ERQLEREINRTIQMIIRDFVLSWYR--SVSQEPAFEEEMEAAMKGLV 156  

                   aelkrrlsrqDsaelissklleIlkklistiedalEavlrkaspqepite
                   +el+rr+s++Ds+++++s+l++++++l+s+i+ a+Ea+++k++p+ep+++
    KIAA0254   157 QELRRRMSVMDSHAVAQSVLTLCGCHLQSYIQ-AKEATAGKNGPVEPSHL 205  

                   idlqiaetaedNYKihkaLsekenEltKEvCRDLvCtsPKDEEkyvRqlv
                   +++++++ta     +h+a++++++E+t                 y+R++v
    KIAA0254   206 WEAYCRATA-----PHPAVHSPSAEVT-----------------YTRGVV 233  

                   elLLklLlPedelesrlhDDDsPLRLFGRGKnERPWPsKsvrvllrEvLa
                   +lLL++L+P+++le+r+                       +r++++E+++
    KIAA0254   234 NLLLQGLVPKPHLETRT-----------------------GRHVVVELIT 260  

                   tavilplIsklSdPDtiNlviIllfsesr<-*
                   ++vilplIs+lSdPD+i+lv++++fs++r   
    KIAA0254   261 CNVILPLISRLSDPDWIHLVLVGIFSKAR    289  

SM00312: domain 1 of 1, from 544 to 676: score 99.9, E = 2.9e-25
                   *->dniai.vavveeetsgkkrgdgkhyyyvieietstned.........
                      + i ++  +++ +t +++ g g h y+++ ++++t++d++++++ ++
    KIAA0254   544    PVIIQnLRITGTITAREHSGTGFHPYTLYTVKYETALDgenssglqq 590  

                   veewtvyRRYsdFleLhskLlkkfpqek.......rrriiPplPekkllg
                   + ++tv RRY++Fl+L+++L++k   +k  ++ +++++ +P lP  +   
    KIAA0254   591 LAYHTVNRRYREFLNLQTRLEEKPDLRKfiknvkgPKKLFPDLPFGN--- 637  

                   ryreraekesmkvkkslnnfseefiekRrrgLerYLqkllnhPelinhyr
                                      ++++ +e R+  Le++L++l+ +Pe++n   
    KIAA0254   638 -------------------MDSDRVEARKSLLESFLKQLCAIPEIAN--- 665  

                   vsevvleFLess<-*
                    se+v+eFL  +   
    KIAA0254   666 -SEEVQEFLALN    676  

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