HUGE

Gene/Protein Characteristic Table for KIAA0255

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07128
Accession No. :	D87444
Description :	Transmembrane 9 superfamily protein member 4.
HUGO Gene Name :	transmembrane 9 superfamily protein member 4 (TM9SF4)
Clone Name :	ha07076 [Vector Info]
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 4028 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1810 bp

Genome contig ID gi51511747f_30061200
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TTTGGTCGGATTGTAAATAAATATACCATTGTCCT
Flanking genome sequence
(157520 - 157569)
----+----*----+----*----+----*----+----*----+----*
ACTGTTTTGTCTTGAATCTCATGCAGGGGTTGGAGGTCTGAGGTGAGACA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 20 f 30161200 30218718 18 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 692 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH22850	100.0	TM9SF4 protein ...	Homo sapiens
Q92544	100.0	Transmembrane 9...	Homo sapiens
Q5RDY2	99.8	Transmembrane 9...	Pongo abelii
XP_001108787	99.7	transmembrane 9...	Macaca mulatta
A5D7E2	98.7	Transmembrane 9...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004240 104 650 PF02990 Nonaspanin (TM9SF)

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004240	104	650	PF02990	Nonaspanin (TM9SF)

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 332 SIINSVVVVFFLSGILSMIIIRT 354 PRIMARY 23

2 395 SSLLGSGIQLFCMILIVIFVAML 417 PRIMARY 23

3 428 LMTTACFLFMFMGVFGGFSAGRL 450 SECONDARY 23

4 467 ATLYPGVVFGICFVLNCFIWGK 488 PRIMARY 22

5 496 FPTMVALLCMWFGISLPLVYLGY 518 PRIMARY 23

6 551 VGILMAGILPFGAMFIELFFIFS 573 PRIMARY 23

7 586 FLFLVFIILVVSCSQISIVMVYF 608 PRIMARY 23

8 621 NFLVSGGSAFYVLVYAIFYFVNK 643 PRIMARY 23

9 657 GYTALMVLSFWLLTGTIGFYAAY 679 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	332	SIINSVVVVFFLSGILSMIIIRT	354	PRIMARY	23
2	395	SSLLGSGIQLFCMILIVIFVAML	417	PRIMARY	23
3	428	LMTTACFLFMFMGVFGGFSAGRL	450	SECONDARY	23
4	467	ATLYPGVVFGICFVLNCFIWGK	488	PRIMARY	22
5	496	FPTMVALLCMWFGISLPLVYLGY	518	PRIMARY	23
6	551	VGILMAGILPFGAMFIELFFIFS	573	PRIMARY	23
7	586	FLFLVFIILVVSCSQISIVMVYF	608	PRIMARY	23
8	621	NFLVSGGSAFYVLVYAIFYFVNK	643	PRIMARY	23
9	657	GYTALMVLSFWLLTGTIGFYAAY	679	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: GGGAACCCAAGCAGTAGAGAG
Primer_r	: CTTTATGAGGTGTCCGTTTCC
PCR product length	: 118 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1810 bp
Genome contig ID	gi51511747f_30061200
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TTTGGTCGGATTGTAAATAAATATACCATTGTCCT
Flanking genome sequence (157520 - 157569)	----+--------+--------+--------+--------+----* ACTGTTTTGTCTTGAATCTCATGCAGGGGTTGGAGGTCTGAGGTGAGACA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	20	f	30161200	30218718	18	99.5	Perfect prediction

Gene/Protein Characteristic Table for KIAA0255

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information