# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha07065.fasta.huge -Q ../query/KIAA0257.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0257, 1805 aa vs ./tmplib.23147 library 1985700 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.7644+/-0.00996; mu= -19.4045+/- 0.670 mean_var=527.5015+/-124.878, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.055842 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 42, opt: 30, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0922 ( 790 res) hh02839a ( 790) 289 39.3 0.0044 >>KIAA0922 ( 790 res) hh02839a (790 aa) initn: 333 init1: 217 opt: 289 Z-score: 147.2 bits: 39.3 E(): 0.0044 Smith-Waterman score: 355; 21.352% identity (50.652% similar) in 843 aa overlap (992-1797:1-781) 970 980 990 1000 1010 1020 KIAA02 SCEGYGFKVVNCQEFTLSANASRDIIILFTPDFTASRVIRELKFITTSGSEFVFILNASL ::::.: :::.:...:.. :: : ::..: KIAA09 PDFTSSWVIRDLSLVTAADLEFRFTLNVTL 10 20 30 1030 1040 1050 1060 1070 KIAA02 PYHMLATCAEALPRPNWELALYIIISGIMSALFLLVIGTAYLEAQGIWEPF---RRRL-- :.:.: ::...: :.:: ... . ..: .: :: :. .:: : : :.: KIAA09 PHHLLPLCADVVPGPSWEESFWRLTVFFVSLSLLGVILIAFQQAQYILMEFMKTRQRQNA 40 50 60 70 80 90 1080 1090 1100 1110 1120 1130 KIAA02 --SFEASNPPFDVGRPFDLRRIVGISSEGNLNTLS-CDPGHSRGFCGAGGSSSRPSAGSH : . .: :.:: : . . . .. :.: . : :.... .. .:: . ... KIAA09 SSSSQQNNGPMDVISPHSYKS----NCKNFLDTYGPSDKGRGKNCLPVNTPQSRIQNAAK 100 110 120 130 140 1140 1150 1160 1170 1180 1190 KIAA02 KQCGPSVHPHSSHSNRNSADVENVRAKNSSSTSSRTSAQAASSQSANKTSPLVLD---SN .. :... ::..... :. . ........:. :... ... ... : . . .. KIAA09 RS--PATYGHSQKKHKCSVYYSKHKTSTAAASSTSTTTEEKQTSPLGSSLPAAKEDICTD 150 160 170 180 190 200 1200 1210 1220 1230 1240 KIAA02 TVTQGHTAGRKSKGAKQSQHGSQHHAHSPLEQHPQPPLPPPV--PQPQEPQPERLSPAPL .. .. . : ..: . . . . .. :... . : . .:. . . KIAA09 AMRENWISLRYASGINVNLQKNLTLPKNLLNKE-ENTLKNTIVFSNPSSECSMKEGIQTC 210 220 230 240 250 260 1250 1260 1270 1280 1290 1300 KIAA02 AHPSHPE-RASSARHSSEDSDITSLIEAMDKDFDH--HDSPALEVFTEQPPSPLPKSKGK :.. . ..: .. .. : . .: ..:: . :: : . :.. KIAA09 MFPKETDIKTSENTAEFKERELCPLKTSKKLPENHLPRNSPQYH----QPDLPEISRKNN 270 280 290 300 310 1310 1320 1330 1340 1350 1360 KIAA02 GKPLQRKVKPPKKQEEKEKKGKGKPQEDELKDSLADDDSSSTTTETSNPDTEPLLKEDTE :. : :: . :. :: ::. .. . . .: : . : .: .:: KIAA09 GNNQQVPVKNEVDHCENLKKVDTKPSSEKKIHKTSREDMFSEKQDI--PFVE---QEDPY 320 330 340 350 360 370 1370 1380 1390 1400 1410 1420 KIAA02 KQKGKQAMPEKHESEMSQVKQKSKKLLNIKKEIPTDVKPSSLELPYTPPLESKQRRNLPS ..: : ::.:....... .... . .:. : : : :: .: . : KIAA09 RKKKLQ---EKREGNLQNLNWSKSR--TCRKNKKRGVAPVS-----RPPEQSDLK--LVC 380 390 400 410 420 1430 1440 1450 1460 1470 1480 KIAA02 KIPLPTAMTSGSKSRNAQKTKGTSKLVDNRPPALAKFLPNSQELGNTSSSEGEKDSPPPE . . ..: . :. . ... : . .:. :: .:. :.: :: KIAA09 SDFERSELSSDINVRS-WCIQESTREVCKADAEIASSLPAAQR-------EAEGYYQKPE 430 440 450 460 470 1490 1500 1510 1520 1530 1540 KIAA02 WDSVPVHKPGSSTDSLYKLSLQTLNADIFLKQRQTSPTPASPSPPAAPCPFVARGSYSSI : ::.: . . . . . .:: . .. .: . :. :. : KIAA09 KKCVDKFCSDSSSDCGSSSGSVRASRGSWGSWSSTSSSDGDKKPMVDAQHFLPAGDSVSQ 480 490 500 510 520 530 1550 1560 1570 1580 1590 KIAA02 VNSSSSSDPKIKQPNGSKHKLTKAASLPGKNGNPTFAAVTAG-----YDK---SPGGNGF . : . ... .. . .: . ::: . ..:. .. :: :: ::: KIAA09 NDFPSEAPISLNLSHNICNPMT-VNSLP-QYAEPSCPSLPAGPTGVEEDKGLYSPGDLWP 540 550 560 570 580 590 1600 1610 1620 1630 1640 1650 KIAA02 AKVSSNKTGFSSSL--GISHAPVDSDGSDSSGL-WSPVSNPS-SPDFTPLNSFSAFGNSF . .... .: :. . .: .: . :: . . . : . ::. :.. KIAA09 TPPVCVTSSLNCTLENGVPCVIQESAPVHNSFIDWSATCEGQFSSAYCPLEL-----NDY 600 610 620 630 640 1660 1670 1680 1690 1700 1710 KIAA02 NLTGEVFSKLGLSRSCNQASQRSWNEFNSGPSYLWESPATDPSPSWPASS--GSPTH-TA : : . . . : : .. . :: . :..: . :. .: .: .:: . :. KIAA09 NAFPEENMNYANGFPCPADVQTDFIDHNSQST--WNTPPNMPA-AWGHASFISSPPYLTS 650 660 670 680 690 700 1720 1730 1740 1750 1760 1770 KIAA02 TSVLGNTSGLWSTTPFSSSIWSSNLSSALPFTTPANTLASIGLMGTENSPAPHAPSTSSP : :. :::. .:::. . :.. : : ::.: : . . KIAA09 TRSLSPMSGLF------GSIWAPQ-SDVYENCCPINPT-------TEHS--THMENQAVV 710 720 730 740 1780 1790 1800 KIAA02 ADDLGQTYNPWR------IWSPTIGRRSSDPWSNSHFPHEN . .::.: ::. : .: .. : : KIAA09 CKEYYPGFNPFRAYMNLDIWTTTANRNANFPLSRDSSYCGNV 750 760 770 780 790 1805 residues in 1 query sequences 1985700 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:37 2008 done: Thu Dec 18 15:13:38 2008 Total Scan time: 0.950 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]